Literature DB >> 26305049

A computational study of the interaction between dopamine and DNA/RNA nucleosides.

Katarína Skúpa1, Milan Melicherčík, Ján Urban.   

Abstract

The interaction between protonated dopamine and neutral RNA and DNA nucleosides was studied by means of density functional theory calculations in vacuum and in implicit water. On the most stable complexes formed with each of the nucleosides, the vertical absorption excitation energies were evaluated and compared with the values of separated dopamine and corresponding nucleoside. The most stable complex was formed with guanosine and the spectral changes in this complex resulted in a significant reduction of the oscillator strength of the first dopamine's transition. In the first guanosine's transition, a redshift of 0.2 eV was found combined with a reduction of the oscillator strength.

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Year:  2015        PMID: 26305049     DOI: 10.1007/s00894-015-2788-9

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  35 in total

1.  Molden: a pre- and post-processing program for molecular and electronic structures.

Authors:  G Schaftenaar; J H Noordik
Journal:  J Comput Aided Mol Des       Date:  2000-02       Impact factor: 3.686

2.  A TDDFT study of the excited states of DNA bases and their assemblies.

Authors:  Daniele Varsano; Rosa Di Felice; Miguel A L Marques; Angel Rubio
Journal:  J Phys Chem B       Date:  2006-04-13       Impact factor: 2.991

3.  Comparison of multiple Amber force fields and development of improved protein backbone parameters.

Authors:  Viktor Hornak; Robert Abel; Asim Okur; Bentley Strockbine; Adrian Roitberg; Carlos Simmerling
Journal:  Proteins       Date:  2006-11-15

4.  Structures and properties of electronically excited chromophores in solution from the polarizable continuum model coupled to the time-dependent density functional theory.

Authors:  Benedetta Mennucci; Chiara Cappelli; Ciro Achille Guido; Roberto Cammi; Jacopo Tomasi
Journal:  J Phys Chem A       Date:  2009-04-02       Impact factor: 2.781

5.  Solvent impact on the aromaticity of benzene analogues: implicit versus explicit solvent approach.

Authors:  Piotr Cysewski; Beata Szefler; Katarzyna Kozłowska
Journal:  J Mol Model       Date:  2009-01-09       Impact factor: 1.810

6.  Retention of function in the DNA homolog of the RNA dopamine aptamer.

Authors:  Ryan Walsh; Maria C DeRosa
Journal:  Biochem Biophys Res Commun       Date:  2009-08-20       Impact factor: 3.575

7.  Further analysis and comparative study of intermolecular interactions using dimers from the S22 database.

Authors:  Laszlo Fusti Molnar; Xiao He; Bing Wang; Kenneth M Merz
Journal:  J Chem Phys       Date:  2009-08-14       Impact factor: 3.488

8.  NMR studies of catecholamines, Acid dissociation equilibria in aqueous solutions.

Authors:  J Granot
Journal:  FEBS Lett       Date:  1976-09-01       Impact factor: 4.124

9.  Spectroscopic and electrochemical studies of DNA breakage induced by dopamine and copper ion.

Authors:  Jun Liu; Qingwen Li; Yadong Yu; Xiang Fang
Journal:  Anal Sci       Date:  2003-08       Impact factor: 2.081

10.  Excited states of DNA base pairs using long-range corrected time-dependent density functional theory.

Authors:  Lasse Jensen; Niranjan Govind
Journal:  J Phys Chem A       Date:  2009-09-10       Impact factor: 2.781

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