Literature DB >> 26302421

Engineering Metamorphic Chemokine Lymphotactin/XCL1 into the GAG-Binding, HIV-Inhibitory Dimer Conformation.

Jamie C Fox1, Robert C Tyler1, Christina Guzzo2, Robbyn L Tuinstra1, Francis C Peterson1, Paolo Lusso2, Brian F Volkman1.   

Abstract

Unlike other chemokines, XCL1 undergoes a distinct metamorphic interconversion between a canonical monomeric chemokine fold and a unique β-sandwich dimer. The monomeric conformation binds and activates the receptor XCR1, whereas the dimer binds extracellular matrix glycosaminoglycans and has been associated with anti-human immunodeficiency virus (HIV) activity. Functional studies of WT-XCL1 are complex, as both conformations are populated in solution. To overcome this limitation, we engineered a stabilized dimeric variant of XCL1 designated CC5. This variant features a new disulfide bond (A36C-A49C) that prevents structural interconversion by locking the chemokine into the β-sandwich dimeric conformation, as demonstrated by NMR structural analysis and hydrogen/deuterium exchange experiments. Functional studies analyzing glycosaminoglycan binding demonstrate that CC5 binds with high affinity to heparin. In addition, CC5 exhibits potent inhibition of HIV-1 activity in primary peripheral blood mononuclear cells (PBMCs), demonstrating the importance of the dimer in blocking viral infection. Conformational variants like CC5 are valuable tools for elucidating the biological relevance of the XCL1 native-state interconversion and will assist in future antiviral and functional studies.

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Year:  2015        PMID: 26302421      PMCID: PMC5028202          DOI: 10.1021/acschembio.5b00542

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  31 in total

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Authors:  Charles D Schwieters; John J Kuszewski; Nico Tjandra; G Marius Clore
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2.  Automated NMR structure calculation with CYANA.

Authors:  Peter Güntert
Journal:  Methods Mol Biol       Date:  2004

Review 3.  HIV and the chemokine system: 10 years later.

Authors:  Paolo Lusso
Journal:  EMBO J       Date:  2006-01-26       Impact factor: 11.598

4.  The program XEASY for computer-supported NMR spectral analysis of biological macromolecules.

Authors:  C Bartels; T H Xia; M Billeter; P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1995-07       Impact factor: 2.835

5.  13C NMR chemical shifts can predict disulfide bond formation.

Authors:  D Sharma; K Rajarathnam
Journal:  J Biomol NMR       Date:  2000-10       Impact factor: 2.835

6.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

Review 7.  Regulation of protein function by glycosaminoglycans--as exemplified by chemokines.

Authors:  T M Handel; Z Johnson; S E Crown; E K Lau; A E Proudfoot
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Many chemokines including CCL20/MIP-3alpha display antimicrobial activity.

Authors:  De Yang; Qian Chen; David M Hoover; Patricia Staley; Kenneth D Tucker; Jacek Lubkowski; Joost J Oppenheim
Journal:  J Leukoc Biol       Date:  2003-09       Impact factor: 4.962

10.  Electrostatic optimization of the conformational energy landscape in a metamorphic protein.

Authors:  Robert C Tyler; Jamie C Wieting; Francis C Peterson; Brian F Volkman
Journal:  Biochemistry       Date:  2012-11-02       Impact factor: 3.162

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  15 in total

Review 1.  New paradigms in chemokine receptor signal transduction: Moving beyond the two-site model.

Authors:  Andrew B Kleist; Anthony E Getschman; Joshua J Ziarek; Amanda M Nevins; Pierre-Arnaud Gauthier; Andy Chevigné; Martyna Szpakowska; Brian F Volkman
Journal:  Biochem Pharmacol       Date:  2016-04-19       Impact factor: 5.858

2.  Gill transcriptomes reveal expression changes of genes related with immune and ion transport under salinity stress in silvery pomfret (Pampus argenteus).

Authors:  Juan Li; Liangyi Xue; Mingyue Cao; Yu Zhang; Yajun Wang; Shanliang Xu; Baoxiao Zheng; Zhengjia Lou
Journal:  Fish Physiol Biochem       Date:  2020-03-12       Impact factor: 2.794

3.  Structure-function guided modeling of chemokine-GPCR specificity for the chemokine XCL1 and its receptor XCR1.

Authors:  Jamie C Fox; Monica A Thomas; Acacia F Dishman; Olav Larsen; Takashi Nakayama; Osamu Yoshie; Mette Marie Rosenkilde; Brian F Volkman
Journal:  Sci Signal       Date:  2019-09-03       Impact factor: 8.192

4.  A Requirement for Metamorphic Interconversion in the Antimicrobial Activity of Chemokine XCL1.

Authors:  Amanda M Nevins; Akshay Subramanian; Jazma L Tapia; David P Delgado; Robert C Tyler; Davin R Jensen; André J Ouellette; Brian F Volkman
Journal:  Biochemistry       Date:  2016-06-28       Impact factor: 3.162

5.  Specific binding-induced modulation of the XCL1 metamorphic equilibrium.

Authors:  Acacia F Dishman; Francis C Peterson; Brian F Volkman
Journal:  Biopolymers       Date:  2020-09-28       Impact factor: 2.505

Review 6.  Chemokines and their receptors: insights from molecular modeling and crystallography.

Authors:  Irina Kufareva
Journal:  Curr Opin Pharmacol       Date:  2016-07-25       Impact factor: 5.547

7.  Transferring the C-terminus of the chemokine CCL21 to CCL19 confers enhanced heparin binding.

Authors:  Austin J Barmore; Sally M Castex; Brittany A Gouletas; Alex J Griffith; Slater W Metz; Nicolas G Muelder; Michael J Populin; David M Sackett; Abigail M Schuster; Christopher T Veldkamp
Journal:  Biochem Biophys Res Commun       Date:  2016-06-21       Impact factor: 3.575

8.  Cytokines Elevated in HIV Elite Controllers Reduce HIV Replication In Vitro and Modulate HIV Restriction Factor Expression.

Authors:  Evan S Jacobs; Sheila M Keating; Mohamed Abdel-Mohsen; Stuart L Gibb; John W Heitman; Heather C Inglis; Jeffrey N Martin; Jinbing Zhang; Zhanna Kaidarova; Xutao Deng; Shiquan Wu; Kathryn Anastos; Howard Crystal; Maria C Villacres; Mary Young; Ruth M Greenblatt; Alan L Landay; Stephen J Gange; Steven G Deeks; Elizabeth T Golub; Satish K Pillai; Philip J Norris
Journal:  J Virol       Date:  2017-02-28       Impact factor: 5.103

9.  Depot-specific inflammation with decreased expression of ATM2 in white adipose tissues induced by high-margarine/lard intake.

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Journal:  PLoS One       Date:  2017-11-15       Impact factor: 3.240

10.  Metamorphic Protein Folding Encodes Multiple Anti-Candida Mechanisms in XCL1.

Authors:  Acacia F Dishman; Jie He; Brian F Volkman; Anna R Huppler
Journal:  Pathogens       Date:  2021-06-17
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