Literature DB >> 26296156

Texture analysis applied to second harmonic generation image data for ovarian cancer classification.

Bruce L Wen1, Molly A Brewer2, Oleg Nadiarnykh3, James Hocker4, Vikas Singh5, Thomas R Mackie1, Paul J Campagnola6.   

Abstract

Remodeling of the extracellular matrix has been implicated in ovarian cancer. To quantitate the remodeling, we implement a form of texture analysis to delineate the collagen fibrillar morphology observed in second harmonic generation microscopy images of human normal and high grade malignant ovarian tissues. In the learning stage, a dictionary of “textons”—frequently occurring texture features that are identified by measuring the image response to a filter bank of various shapes, sizes, and orientations—is created. By calculating a representative model based on the texton distribution for each tissue type using a training set of respective second harmonic generation images, we then perform classification between images of normal and high grade malignant ovarian tissues. By optimizing the number of textons and nearest neighbors, we achieved classification accuracy up to 97% based on the area under receiver operating characteristic curves (true positives versus false positives). The local analysis algorithm is a more general method to probe rapidly changing fibrillar morphologies than global analyses such as FFT. It is also more versatile than other texture approaches as the filter bank can be highly tailored to specific applications (e.g., different disease states) by creating customized libraries based on common image features.

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Year:  2014        PMID: 26296156      PMCID: PMC4161736          DOI: 10.1117/1.JBO.19.9.096007

Source DB:  PubMed          Journal:  J Biomed Opt        ISSN: 1083-3668            Impact factor:   3.170


  32 in total

1.  Receiver operating characteristic curves and their use in radiology.

Authors:  Nancy A Obuchowski
Journal:  Radiology       Date:  2003-10       Impact factor: 11.105

2.  Increased extracellular matrix remodeling is associated with tumor progression in human hepatocellular carcinomas.

Authors:  N Théret; O Musso; B Turlin; D Lotrian; P Bioulac-Sage; J P Campion; K Boudjéma; B Clément
Journal:  Hepatology       Date:  2001-07       Impact factor: 17.425

3.  Spectral moment invariant analysis of disorder in polarization-modulated second-harmonic-generation images obtained from collagen assemblies.

Authors:  Mingshi Wang; Karen M Reiser; André Knoesen
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2007-11       Impact factor: 2.129

4.  Nonlinear optical microscopy: use of second harmonic generation and two-photon microscopy for automated quantitative liver fibrosis studies.

Authors:  Wanxin Sun; Shi Chang; Dean C S Tai; Nancy Tan; Guangfa Xiao; Huihuan Tang; Hanry Yu
Journal:  J Biomed Opt       Date:  2008 Nov-Dec       Impact factor: 3.170

5.  Three-dimensional investigation and scoring of extracellular matrix remodeling during lung fibrosis using multiphoton microscopy.

Authors:  Ana-Maria Pena; Aurélie Fabre; Delphine Débarre; Joëlle Marchal-Somme; Bruno Crestani; Jean-Louis Martin; Emmanuel Beaurepaire; Marie-Claire Schanne-Klein
Journal:  Microsc Res Tech       Date:  2007-02       Impact factor: 2.769

6.  Second harmonic generation imaging and Fourier transform spectral analysis reveal damage in fatigue-loaded tendons.

Authors:  David T Fung; Jedd B Sereysky; Jelena Basta-Pljakic; Damien M Laudier; Rumana Huq; Karl J Jepsen; Mitchell B Schaffler; Evan L Flatow
Journal:  Ann Biomed Eng       Date:  2010-03-16       Impact factor: 3.934

7.  Second harmonic generation microscopy analysis of extracellular matrix changes in human idiopathic pulmonary fibrosis.

Authors:  Karissa Tilbury; James Hocker; Bruce L Wen; Nathan Sandbo; Vikas Singh; Paul J Campagnola
Journal:  J Biomed Opt       Date:  2014-08       Impact factor: 3.170

8.  Quantitative second harmonic generation imaging of the diseased state osteogenesis imperfecta: experiment and simulation.

Authors:  Ronald Lacomb; Oleg Nadiarnykh; Paul J Campagnola
Journal:  Biophys J       Date:  2008-02-15       Impact factor: 4.033

9.  Alterations of the extracellular matrix in ovarian cancer studied by Second Harmonic Generation imaging microscopy.

Authors:  Oleg Nadiarnykh; Ronald B LaComb; Molly A Brewer; Paul J Campagnola
Journal:  BMC Cancer       Date:  2010-03-11       Impact factor: 4.430

10.  Second harmonic generation reveals matrix alterations during breast tumor progression.

Authors:  Kathleen Burke; Ping Tang; Edward Brown
Journal:  J Biomed Opt       Date:  2013-03       Impact factor: 3.170

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  19 in total

1.  Migration dynamics of ovarian epithelial cells on micro-fabricated image-based models of normal and malignant stroma.

Authors:  Samuel Alkmin; Rebecca Brodziski; Haleigh Simon; Daniel Hinton; Randall H Goldsmith; Manish Patankar; Paul J Campagnola
Journal:  Acta Biomater       Date:  2019-09-27       Impact factor: 8.947

2.  Fitting-free algorithm for efficient quantification of collagen fiber alignment in SHG imaging applications.

Authors:  Gunnsteinn Hall; Wenxuan Liang; Xingde Li
Journal:  Biomed Opt Express       Date:  2017-09-20       Impact factor: 3.732

3.  Quantization of collagen organization in the stroma with a new order coefficient.

Authors:  James A Germann; Eduardo Martinez-Enriquez; Susana Marcos
Journal:  Biomed Opt Express       Date:  2017-12-08       Impact factor: 3.732

4.  Methods for Quantifying Fibrillar Collagen Alignment.

Authors:  Yuming Liu; Adib Keikhosravi; Guneet S Mehta; Cole R Drifka; Kevin W Eliceiri
Journal:  Methods Mol Biol       Date:  2017

5.  Association of the Collagen Signature in the Tumor Microenvironment With Lymph Node Metastasis in Early Gastric Cancer.

Authors:  Dexin Chen; Gang Chen; Wei Jiang; Meiting Fu; Wenju Liu; Jian Sui; Shuoyu Xu; Zhangyuanzhu Liu; Xiaoling Zheng; Liangjie Chi; Dajia Lin; Kai Li; Weisheng Chen; Ning Zuo; Jianping Lu; Jianxin Chen; Guoxin Li; Shuangmu Zhuo; Jun Yan
Journal:  JAMA Surg       Date:  2019-03-20       Impact factor: 14.766

6.  Integrated Cells and Collagen Fibers Spatial Image Analysis.

Authors:  Georgii Vasiukov; Tatiana Novitskaya; Maria-Fernanda Senosain; Alex Camai; Anna Menshikh; Pierre Massion; Andries Zijlstra; Sergey Novitskiy
Journal:  Front Bioinform       Date:  2021-11-08

7.  Multispectral fluorescence imaging of human ovarian and fallopian tube tissue for early-stage cancer detection.

Authors:  Tyler H Tate; Brenda Baggett; Photini F S Rice; Jennifer Watson Koevary; Gabriel V Orsinger; Ariel C Nymeyer; Weston A Welge; Kathylynn Saboda; Denise J Roe; Kenneth D Hatch; Setsuko K Chambers; Urs Utzinger; Jennifer Kehlet Barton
Journal:  J Biomed Opt       Date:  2016-05-01       Impact factor: 3.170

8.  Applications of second-harmonic generation imaging microscopy in ovarian and breast cancer.

Authors:  Karissa Tilbury; Paul J Campagnola
Journal:  Perspect Medicin Chem       Date:  2015-04-16

9.  Multiscale anisotropy analysis of second-harmonic generation collagen imaging of mouse skin.

Authors:  Karissa Tilbury; XiangHua Han; Peter Brooks; Andre Khalil
Journal:  J Biomed Opt       Date:  2021-06       Impact factor: 3.170

10.  Evaluation of Collagen Alterations in Early Precursor Lesions of High Grade Serous Ovarian Cancer by Second Harmonic Generation Microscopy and Mass Spectrometry.

Authors:  Kristal L Gant; Alexander N Jambor; Zihui Li; Eric C Rentchler; Paul Weisman; Lingjun Li; Manish S Patankar; Paul J Campagnola
Journal:  Cancers (Basel)       Date:  2021-06-04       Impact factor: 6.575

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