Literature DB >> 26293859

Management of Dynamic Biomedical Terminologies: Current Status and Future Challenges.

M Da Silveira1, J C Dos Reis, C Pruski.   

Abstract

OBJECTIVES: Controlled terminologies and their dependent artefacts provide a consensual understanding of a domain while reducing ambiguities and enabling reasoning. However, the evolution of a domain's knowledge directly impacts these terminologies and generates inconsistencies in the underlying biomedical information systems. In this article, we review existing work addressing the dynamic aspect of terminologies as well as their effects on mappings and semantic annotations.
METHODS: We investigate approaches related to the identification, characterization and propagation of changes in terminologies, mappings and semantic annotations including techniques to update their content. RESULTS AND
CONCLUSION: Based on the explored issues and existing methods, we outline open research challenges requiring investigation in the near future.

Keywords:  Knowledge management; biomedical ontologies; knowledge representation; ontology evolution

Mesh:

Year:  2015        PMID: 26293859      PMCID: PMC4587064          DOI: 10.15265/IY-2015-002

Source DB:  PubMed          Journal:  Yearb Med Inform        ISSN: 0943-4747


  24 in total

1.  The compositional structure of Gene Ontology terms.

Authors:  P V Ogren; K B Cohen; G K Acquaah-Mensah; J Eberlein; L Hunter
Journal:  Pac Symp Biocomput       Date:  2004

2.  COnto-Diff: generation of complex evolution mappings for life science ontologies.

Authors:  Michael Hartung; Anika Groß; Erhard Rahm
Journal:  J Biomed Inform       Date:  2012-05-08       Impact factor: 6.317

3.  Sharing ontology between ICD 11 and SNOMED CT will enable seamless re-use and semantic interoperability.

Authors:  Jean-Marie Rodrigues; Stefan Schulz; Alan Rector; Kent Spackman; Bedirhan Üstün; Christopher G Chute; Vincenzo Della Mea; Jane Millar; Kristina Brand Persson
Journal:  Stud Health Technol Inform       Date:  2013

Review 4.  Representation of change in controlled medical terminologies.

Authors:  D E Oliver; Y Shahar; E H Shortliffe; M A Musen
Journal:  Artif Intell Med       Date:  1999-01       Impact factor: 5.326

5.  Health multi-terminology portal: a semantic added-value for patient safety.

Authors:  Julien Grosjean; Tayeb Merabti; Badisse Dahamna; Ivan Kergourlay; Benoit Thirion; Lina F Soualmia; Stefan J Darmoni
Journal:  Stud Health Technol Inform       Date:  2011

6.  Using the wisdom of the crowds to find critical errors in biomedical ontologies: a study of SNOMED CT.

Authors:  Jonathan M Mortensen; Evan P Minty; Michael Januszyk; Timothy E Sweeney; Alan L Rector; Natalya F Noy; Mark A Musen
Journal:  J Am Med Inform Assoc       Date:  2014-10-23       Impact factor: 4.497

7.  Assessing identity, redundancy and confounds in Gene Ontology annotations over time.

Authors:  Jesse Gillis; Paul Pavlidis
Journal:  Bioinformatics       Date:  2013-01-06       Impact factor: 6.937

8.  Characterizing semantic mappings adaptation via biomedical KOS evolution: a case study investigating SNOMED CT and ICD.

Authors:  Julio Cesar Dos Reis; Cédric Pruski; Marcos Da Silveira; Chantal Reynaud-Delaître
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

9.  BioPortal as a Dataset of Linked Biomedical Ontologies and Terminologies in RDF.

Authors:  Manuel Salvadores; Paul R Alexander; Mark A Musen; Natalya F Noy
Journal:  Semant Web       Date:  2013       Impact factor: 2.214

10.  Predicting the extension of biomedical ontologies.

Authors:  Catia Pesquita; Francisco M Couto
Journal:  PLoS Comput Biol       Date:  2012-09-13       Impact factor: 4.475

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  2 in total

Review 1.  Evolution of biomedical ontologies and mappings: Overview of recent approaches.

Authors:  Anika Groß; Cédric Pruski; Erhard Rahm
Journal:  Comput Struct Biotechnol J       Date:  2016-08-26       Impact factor: 7.271

2.  CUILESS2016: a clinical corpus applying compositional normalization of text mentions.

Authors:  John D Osborne; Matthew B Neu; Maria I Danila; Thamar Solorio; Steven J Bethard
Journal:  J Biomed Semantics       Date:  2018-01-10
  2 in total

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