Literature DB >> 26293390

Screening for cystic fibrosis in New York State: considerations for algorithm improvements.

Denise M Kay1, Breanne Maloney2, Rhonda Hamel3, Melissa Pearce4, Lenore DeMartino5, Rebecca McMahon6, Emily McGrath7, Lea Krein8, Beth Vogel9, Carlos A Saavedra-Matiz10, Michele Caggana11, Norma P Tavakoli12,13.   

Abstract

Newborn screening for cystic fibrosis (CF), a chronic progressive disease affecting mucus viscosity, has been beneficial in both improving life expectancy and the quality of life for individuals with CF. In New York State from 2007 to 2012 screening for CF involved measuring immunoreactive trypsinogen (IRT) levels in dried blood spots from newborns using the IMMUCHEM(™) Blood Spot Trypsin-MW ELISA kit. Any specimen in the top 5% IRT level underwent DNA analysis using the InPlex(®) CF Molecular Test. Of the 1.48 million newborns screened during the 6-year time period, 7631 babies were referred for follow-up. CF was confirmed in 251 cases, and 94 cases were diagnosed with CF transmembrane conductance regulated-related metabolic syndrome or possible CF. Nine reports of false negatives were made to the program. Variation in daily average IRT was observed depending on the season (4-6 ng/ml) and kit lot (<3 ng/ml), supporting the use of a floating cutoff. The screening method had a sensitivity of 96.5%, specificity of 99.6%, positive predictive value of 4.5%, and negative predictive value of 99.5%.
CONCLUSION: Considerations for CF screening algorithms should include IRT variations resulting from age at specimen collection, sex, race/ethnicity, season, and manufacturer kit lots. WHAT IS KNOWN: Measuring IRT level in dried blood spots is the first-tier screen for CF. Current algorithms for CF screening lead to substantial false-positive referral rates. WHAT IS NEW: IRT values were affected by age of infant when specimen is collected, race/ethnicity and sex of infant, and changes in seasons and manufacturer kit lots The prevalence of CF in NYS is 1 in 4200 with the highest prevalence in White infants (1 in 2600) and the lowest in Black infants (1 in 15,400).

Entities:  

Keywords:  CFTR; Cystic fibrosis; Immunoreactive trypsinogen; Mutation analysis; Newborn screening

Mesh:

Substances:

Year:  2015        PMID: 26293390     DOI: 10.1007/s00431-015-2616-3

Source DB:  PubMed          Journal:  Eur J Pediatr        ISSN: 0340-6199            Impact factor:   3.183


  67 in total

1.  Best practice guidelines for molecular genetic diagnosis of cystic fibrosis and CFTR-related disorders--updated European recommendations.

Authors:  Els Dequeker; Manfred Stuhrmann; Michael A Morris; Teresa Casals; Carlo Castellani; Mireille Claustres; Harry Cuppens; Marie des Georges; Claude Ferec; Milan Macek; Pier-Franco Pignatti; Hans Scheffer; Marianne Schwartz; Michal Witt; Martin Schwarz; Emmanuelle Girodon
Journal:  Eur J Hum Genet       Date:  2008-08-06       Impact factor: 4.246

Review 2.  The diagnosis of cystic fibrosis: a consensus statement. Cystic Fibrosis Foundation Consensus Panel.

Authors:  B J Rosenstein; G R Cutting
Journal:  J Pediatr       Date:  1998-04       Impact factor: 4.406

3.  Two-tiered immunoreactive trypsinogen-based newborn screening for cystic fibrosis in Colorado: screening efficacy and diagnostic outcomes.

Authors:  Marci K Sontag; Keith B Hammond; Julian Zielenski; Jeffrey S Wagener; Frank J Accurso
Journal:  J Pediatr       Date:  2005-09       Impact factor: 4.406

Review 4.  The diagnosis of cystic fibrosis.

Authors:  R C Stern
Journal:  N Engl J Med       Date:  1997-02-13       Impact factor: 91.245

5.  Neonatal screening for cystic fibrosis: comparing the performances of IRT/DNA and IRT/PAP.

Authors:  Jacques Sarles; Roch Giorgi; Patrice Berthézène; Anne Munck; David Cheillan; Jean-Charles Dagorn; Michel Roussey
Journal:  J Cyst Fibros       Date:  2014-02-07       Impact factor: 5.482

6.  Identification of the cystic fibrosis gene: cloning and characterization of complementary DNA.

Authors:  J R Riordan; J M Rommens; B Kerem; N Alon; R Rozmahel; Z Grzelczak; J Zielenski; S Lok; N Plavsic; J L Chou
Journal:  Science       Date:  1989-09-08       Impact factor: 47.728

7.  Novel CFTR variants identified during the first 3 years of cystic fibrosis newborn screening in California.

Authors:  Lisa Prach; Ruth Koepke; Martin Kharrazi; Steven Keiles; Danieli B Salinas; Maria Carmen Reyes; Mark Pian; Harry Opsimos; Kimberly N Otsuka; Karen Ann Hardy; Carlos E Milla; Jacquelyn M Zirbes; Bradley Chipps; Susan O'Bra; Muhammad M Saeed; Reddivalam Sudhakar; Susan Lehto; Dennis Nielson; Gregory F Shay; Mary Seastrand; Sanjay Jhawar; Bruce Nickerson; Christopher Landon; Ann Thompson; Eliezer Nussbaum; Terry Chin; Henry Wojtczak
Journal:  J Mol Diagn       Date:  2013-06-28       Impact factor: 5.568

8.  Identification of the cystic fibrosis gene: chromosome walking and jumping.

Authors:  J M Rommens; M C Iannuzzi; B Kerem; M L Drumm; G Melmer; M Dean; R Rozmahel; J L Cole; D Kennedy; N Hidaka
Journal:  Science       Date:  1989-09-08       Impact factor: 47.728

9.  Improving newborn screening for cystic fibrosis using next-generation sequencing technology: a technical feasibility study.

Authors:  Mei W Baker; Anne E Atkins; Suzanne K Cordovado; Miyono Hendrix; Marie C Earley; Philip M Farrell
Journal:  Genet Med       Date:  2015-02-12       Impact factor: 8.822

10.  Genotype-phenotype correlation and frequency of the 3199del6 cystic fibrosis mutation among I148T carriers: results from a collaborative study.

Authors:  K G Monaghan; W E Highsmith; J Amos; V M Pratt; B Roa; M Friez; L L Pike-Buchanan; I M Buyse; J B Redman; C M Strom; A L Young; W Sun
Journal:  Genet Med       Date:  2004 Sep-Oct       Impact factor: 8.822

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  4 in total

1.  The influence of seasonality and manufacturer kit lot changes on 17α-hydroxyprogesterone measurements and referral rates of congenital adrenal hyperplasia in newborns.

Authors:  Melissa Pearce; Erin Dauerer; A Gregory DiRienzo; Michele Caggana; Norma P Tavakoli
Journal:  Eur J Pediatr       Date:  2016-11-29       Impact factor: 3.183

2.  Newborn Screening Quality Assurance Program for CFTR Mutation Detection and Gene Sequencing to Identify Cystic Fibrosis.

Authors:  Miyono M Hendrix; Stephanie L Foster; Suzanne K Cordovado
Journal:  J Inborn Errors Metab Screen       Date:  2016-08-01

3.  Targeted next generation sequencing for newborn screening of Menkes disease.

Authors:  Richard B Parad; Stephen G Kaler; Evan Mauceli; Tanya Sokolsky; Ling Yi; Arindam Bhattacharjee
Journal:  Mol Genet Metab Rep       Date:  2020-07-21

4.  Assessing the Performance of Dried-Blood-Spot DNA Extraction Methods in Next Generation Sequencing.

Authors:  Miyono M Hendrix; Carla D Cuthbert; Suzanne K Cordovado
Journal:  Int J Neonatal Screen       Date:  2020-04-30
  4 in total

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