| Literature DB >> 26291359 |
Xiang-Qiang Chu1,2, Eugene Mamontov3, Hugh O'Neill2, Qiu Zhang2.
Abstract
The dynamics of RNA within the β-relaxation region of 10 ps to 1 ns is crucial to its biological function. Because of its simpler chemical building blocks and the lack of the side methyl groups, faster relaxational dynamics of RNA compared to proteins can be expected. However, the situation is actually opposite. In this work, the relaxational dynamics of tRNA is measured by quasielastic neutron scattering and analyzed using the mode coupling theory, originally developed for glass-forming liquids. Our results reveal that the dynamics of tRNA follows a log-decay within the β-relaxation region, which is an important trait demonstrated by the dynamics of proteins. The dynamics of hydrated tRNA and lysozyme compared in the time domain further demonstrate that the slower dynamics of tRNA relative to proteins originates from the difference in the folded states of tRNA and proteins, as well as the influence of their hydration water.Entities:
Keywords: logarithmic decay; mode coupling theory; neutron scattering; protein dynamics; tRNA dynamics; β-relaxation
Year: 2013 PMID: 26291359 DOI: 10.1021/jz400128u
Source DB: PubMed Journal: J Phys Chem Lett ISSN: 1948-7185 Impact factor: 6.475