Literature DB >> 26291359

Temperature Dependence of Logarithmic-like Relaxational Dynamics of Hydrated tRNA.

Xiang-Qiang Chu1,2, Eugene Mamontov3, Hugh O'Neill2, Qiu Zhang2.   

Abstract

The dynamics of RNA within the β-relaxation region of 10 ps to 1 ns is crucial to its biological function. Because of its simpler chemical building blocks and the lack of the side methyl groups, faster relaxational dynamics of RNA compared to proteins can be expected. However, the situation is actually opposite. In this work, the relaxational dynamics of tRNA is measured by quasielastic neutron scattering and analyzed using the mode coupling theory, originally developed for glass-forming liquids. Our results reveal that the dynamics of tRNA follows a log-decay within the β-relaxation region, which is an important trait demonstrated by the dynamics of proteins. The dynamics of hydrated tRNA and lysozyme compared in the time domain further demonstrate that the slower dynamics of tRNA relative to proteins originates from the difference in the folded states of tRNA and proteins, as well as the influence of their hydration water.

Entities:  

Keywords:  logarithmic decay; mode coupling theory; neutron scattering; protein dynamics; tRNA dynamics; β-relaxation

Year:  2013        PMID: 26291359     DOI: 10.1021/jz400128u

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  6 in total

1.  Effects of pressure on the dynamics of an oligomeric protein from deep-sea hyperthermophile.

Authors:  Utsab R Shrestha; Debsindhu Bhowmik; John R D Copley; Madhusudan Tyagi; Juscelino B Leão; Xiang-qiang Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-26       Impact factor: 11.205

2.  Powdered G-Protein-Coupled Receptors.

Authors:  Suchithranga M D C Perera; Udeep Chawla; Michael F Brown
Journal:  J Phys Chem Lett       Date:  2016-10-12       Impact factor: 6.475

3.  Quasi-elastic Neutron Scattering Reveals Ligand-Induced Protein Dynamics of a G-Protein-Coupled Receptor.

Authors:  Utsab R Shrestha; Suchithranga M D C Perera; Debsindhu Bhowmik; Udeep Chawla; Eugene Mamontov; Michael F Brown; Xiang-Qiang Chu
Journal:  J Phys Chem Lett       Date:  2016-10-04       Impact factor: 6.475

4.  Dynamics of water bound to crystalline cellulose.

Authors:  Hugh O'Neill; Sai Venkatesh Pingali; Loukas Petridis; Junhong He; Eugene Mamontov; Liang Hong; Volker Urban; Barbara Evans; Paul Langan; Jeremy C Smith; Brian H Davison
Journal:  Sci Rep       Date:  2017-09-19       Impact factor: 4.379

5.  Slowdown of Interhelical Motions Induces a Glass Transition in RNA.

Authors:  Aaron T Frank; Qi Zhang; Hashim M Al-Hashimi; Ioan Andricioaei
Journal:  Biophys J       Date:  2015-06-16       Impact factor: 4.033

6.  The logarithmic relaxation process and the critical temperature of liquids in nano-confined states.

Authors:  Changjiu Chen; Kaikin Wong; Richard A Mole; Dehong Yu; Suresh M Chathoth
Journal:  Sci Rep       Date:  2016-09-27       Impact factor: 4.379

  6 in total

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