Literature DB >> 26286215

Recent Progresses in Studying Helix-Helix Interactions in Proteins by Incorporating the Wenxiang Diagram into the NMR Spectroscopy.

Guo-Ping Zhou1, Dong Chen, Siming Liao, Ri-Bo Huang.   

Abstract

All residues in an alpha helix can be characterized and dispositioned on a 2D the wenxiang diagram, which possesses the following features: (1) the relative locations of the amino acids in the α-helix can be clearly displayed regardless how long it is; (2) direction of an alphahelix can be indicated; and (3) more information regarding each of the constituent amino acid residues in an alpha helix. Owing to its intuitionism and easy visibility, wenxiang diagrams have had an immense influence on our understanding of protein structure, protein-protein interactions, and the effect of helical structural stability on protein conformational transitions. In this review, we summarize two recent applications of wenxiang diagrams incorporating NMR spectroscopy in the researches of the coiled-coil protein interactions related to the regulation of contraction or relaxation states of vascular smooth muscle cells, and the effects of α-helical stability on the protein misfolding in prion disease, in hopes that the gained valuable information through these studies can stimulate more and more widely applications of wenxiang diagrams in structural biology.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 26286215     DOI: 10.2174/1568026615666150819104617

Source DB:  PubMed          Journal:  Curr Top Med Chem        ISSN: 1568-0266            Impact factor:   3.295


  6 in total

Review 1.  Structural Variability in the RLR-MAVS Pathway and Sensitive Detection of Viral RNAs.

Authors:  Qiu-Xing Jiang
Journal:  Med Chem       Date:  2019       Impact factor: 2.745

Review 2.  Some illuminating remarks on molecular genetics and genomics as well as drug development.

Authors:  Kuo-Chen Chou
Journal:  Mol Genet Genomics       Date:  2020-01-01       Impact factor: 3.291

3.  Internet of things-enabled real-time health monitoring system using deep learning.

Authors:  Xingdong Wu; Chao Liu; Lijun Wang; Muhammad Bilal
Journal:  Neural Comput Appl       Date:  2021-09-15       Impact factor: 5.102

4.  2L-piRNA: A Two-Layer Ensemble Classifier for Identifying Piwi-Interacting RNAs and Their Function.

Authors:  Bin Liu; Fan Yang; Kuo-Chen Chou
Journal:  Mol Ther Nucleic Acids       Date:  2017-04-13

5.  iRNA-PseColl: Identifying the Occurrence Sites of Different RNA Modifications by Incorporating Collective Effects of Nucleotides into PseKNC.

Authors:  Pengmian Feng; Hui Ding; Hui Yang; Wei Chen; Hao Lin; Kuo-Chen Chou
Journal:  Mol Ther Nucleic Acids       Date:  2017-03-29

6.  iRNA-AI: identifying the adenosine to inosine editing sites in RNA sequences.

Authors:  Wei Chen; Pengmian Feng; Hui Yang; Hui Ding; Hao Lin; Kuo-Chen Chou
Journal:  Oncotarget       Date:  2017-01-17
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.