Literature DB >> 26286008

Flavonoids as Multi-target Inhibitors for Proteins Associated with Ebola Virus: In Silico Discovery Using Virtual Screening and Molecular Docking Studies.

Utkarsh Raj1, Pritish Kumar Varadwaj2.   

Abstract

Ebola virus is a single-stranded, negative-sense RNA virus that causes severe hemorrhagic fever in humans and non-human primates. This virus is unreceptive to a large portion of the known antiviral drugs, and there is no valid treatment as on date for disease created by this pathogen. Looking into its ability to create a pandemic scenario across globe, there is an utmost need for new drugs and therapy to combat this life-threatening infection. The current study deals with the evaluation of the inhibitory activity of flavonoids against the four selected Ebola virus receptor proteins, using in silico studies. The viral proteins VP40, VP35, VP30 and VP24 were docked with small molecules obtained from flavonoid class and its derivatives and evaluated on the basis of energetics, stereochemical considerations and pharmacokinetic properties to identify potential lead compounds. The results showed that both top-ranking screened flavonoids, i.e., Gossypetin and Taxifolin, showed better docking scores and binding energies in all the EBOV receptors when compared to those of the reported compound. All the screened flavonoids have known antiviral activity, acceptable pharmacokinetic properties and are being used on human and thus can be taken as anti-Ebola therapy without the time lag for clinical trial.

Entities:  

Keywords:  Docking; Ebola virus; Flavonoids; Gossypetin; Pharmacokinetic; Taxifolin; Virtual screening

Mesh:

Substances:

Year:  2015        PMID: 26286008     DOI: 10.1007/s12539-015-0109-8

Source DB:  PubMed          Journal:  Interdiscip Sci        ISSN: 1867-1462            Impact factor:   2.233


  18 in total

1.  Assembling the Puzzle of Taxifolin Polymorphism.

Authors:  Roman P Terekhov; Irina A Selivanova; Nonna A Tyukavkina; Igor R Ilyasov; Anastasiya K Zhevlakova; Alexander V Dzuban; Anatoliy G Bogdanov; Georgiy N Davidovich; Gennadii V Shylov; Andrey N Utenishev; Dmitriy Yu Kovalev; Anatoliy A Fenin; Tatyana G Kabluchko
Journal:  Molecules       Date:  2020-11-20       Impact factor: 4.411

Review 2.  Insights into the Pharmacological Effects of Flavonoids: The Systematic Review of Computer Modeling.

Authors:  Amir Taldaev; Roman Terekhov; Ilya Nikitin; Anastasiya Zhevlakova; Irina Selivanova
Journal:  Int J Mol Sci       Date:  2022-05-27       Impact factor: 6.208

3.  Quercetin Blocks Ebola Virus Infection by Counteracting the VP24 Interferon-Inhibitory Function.

Authors:  Elisa Fanunza; Mathieu Iampietro; Simona Distinto; Angela Corona; Marina Quartu; Elias Maccioni; Branka Horvat; Enzo Tramontano
Journal:  Antimicrob Agents Chemother       Date:  2020-06-23       Impact factor: 5.191

4.  Integrated Computational Approach for Virtual Hit Identification against Ebola Viral Proteins VP35 and VP40.

Authors:  Muhammad Usman Mirza; Nazia Ikram
Journal:  Int J Mol Sci       Date:  2016-10-26       Impact factor: 5.923

5.  Ebola Virus Bayesian Machine Learning Models Enable New in Vitro Leads.

Authors:  Manu Anantpadma; Thomas Lane; Kimberley M Zorn; Mary A Lingerfelt; Alex M Clark; Joel S Freundlich; Robert A Davey; Peter B Madrid; Sean Ekins
Journal:  ACS Omega       Date:  2019-01-30

6.  Virtual screening and repurposing of FDA approved drugs against COVID-19 main protease.

Authors:  Mahmoud Kandeel; Mohammed Al-Nazawi
Journal:  Life Sci       Date:  2020-04-03       Impact factor: 5.037

7.  Machine learning models identify molecules active against the Ebola virus in vitro.

Authors:  Sean Ekins; Joel S Freundlich; Alex M Clark; Manu Anantpadma; Robert A Davey; Peter Madrid
Journal:  F1000Res       Date:  2015-10-20

Review 8.  A Systematic Review of Computational Drug Discovery, Development, and Repurposing for Ebola Virus Disease Treatment.

Authors:  James Schuler; Matthew L Hudson; Diane Schwartz; Ram Samudrala
Journal:  Molecules       Date:  2017-10-20       Impact factor: 4.411

9.  Antiviral Agents Against Ebola Virus Infection: Repositioning Old Drugs and Finding Novel Small Molecules.

Authors:  Elisa Fanunza; Aldo Frau; Angela Corona; Enzo Tramontano
Journal:  Annu Rep Med Chem       Date:  2018-09-22       Impact factor: 1.059

10.  Computational selection of flavonoid compounds as inhibitors against SARS-CoV-2 main protease, RNA-dependent RNA polymerase and spike proteins: A molecular docking study.

Authors:  Marimuthu Ragavan Rameshkumar; Purushothaman Indu; Narasingam Arunagirinathan; Babu Venkatadri; Hamed A El-Serehy; Ajaz Ahmad
Journal:  Saudi J Biol Sci       Date:  2020-10-22       Impact factor: 4.219

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