Literature DB >> 26283374

Screen for multi-SUMO-binding proteins reveals a multi-SIM-binding mechanism for recruitment of the transcriptional regulator ZMYM2 to chromatin.

Elisa Aguilar-Martinez1, Xi Chen1, Aaron Webber1, A Paul Mould1, Anne Seifert2, Ronald T Hay2, Andrew D Sharrocks3.   

Abstract

Protein SUMOylation has emerged as an important regulatory event, particularly in nuclear processes such as transcriptional control and DNA repair. In this context, small ubiquitin-like modifier (SUMO) often provides a binding platform for the recruitment of proteins via their SUMO-interacting motifs (SIMs). Recent discoveries point to an important role for multivalent SUMO binding through multiple SIMs in the binding partner as exemplified by poly-SUMOylation acting as a binding platform for ubiquitin E3 ligases such as ring finger protein 4. Here, we have investigated whether other types of protein are recruited through multivalent SUMO interactions. We have identified dozens of proteins that bind to multi-SUMO platforms, thereby uncovering a complex potential regulatory network. Multi-SUMO binding is mediated through multi-SIM modules, and the functional importance of these interactions is demonstrated for the transcriptional corepressor ZMYM2/ZNF198 where its multi-SUMO-binding activity is required for its recruitment to chromatin.

Entities:  

Keywords:  SIM; SUMO; ZMYM2; ZNF198; chromatin

Mesh:

Substances:

Year:  2015        PMID: 26283374      PMCID: PMC4568223          DOI: 10.1073/pnas.1509716112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  54 in total

1.  Small ubiquitin-related modifier (SUMO) binding determines substrate recognition and paralog-selective SUMO modification.

Authors:  Jianmei Zhu; Shanshan Zhu; Catherine M Guzzo; Nathan A Ellis; Ki Sa Sung; Cheol Yong Choi; Michael J Matunis
Journal:  J Biol Chem       Date:  2008-08-15       Impact factor: 5.157

Review 2.  The fast-growing business of SUMO chains.

Authors:  Helle D Ulrich
Journal:  Mol Cell       Date:  2008-11-07       Impact factor: 17.970

Review 3.  SUMO association with repressor complexes, emerging routes for transcriptional control.

Authors:  Mario Garcia-Dominguez; Jose C Reyes
Journal:  Biochim Biophys Acta       Date:  2009-07-17

4.  ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions.

Authors:  Dominic Schmidt; Michael D Wilson; Christiana Spyrou; Gordon D Brown; James Hadfield; Duncan T Odom
Journal:  Methods       Date:  2009-03-09       Impact factor: 3.608

5.  Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.

Authors:  Ben Langmead; Cole Trapnell; Mihai Pop; Steven L Salzberg
Journal:  Genome Biol       Date:  2009-03-04       Impact factor: 13.583

6.  SRBC/cavin-3 is a caveolin adapter protein that regulates caveolae function.

Authors:  Kerrie-Ann McMahon; Hubert Zajicek; Wei-Ping Li; Michael J Peyton; John D Minna; V James Hernandez; Katherine Luby-Phelps; Richard G W Anderson
Journal:  EMBO J       Date:  2009-03-05       Impact factor: 11.598

7.  Structure of the small ubiquitin-like modifier (SUMO)-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3.

Authors:  Naotaka Sekiyama; Takahisa Ikegami; Tsutomu Yamane; Mitsunori Ikeguchi; Yasuhiro Uchimura; Daichi Baba; Mariko Ariyoshi; Hidehito Tochio; Hisato Saitoh; Masahiro Shirakawa
Journal:  J Biol Chem       Date:  2008-10-07       Impact factor: 5.157

8.  Extracellular signal-regulated kinase mitogen-activated protein kinase signaling initiates a dynamic interplay between sumoylation and ubiquitination to regulate the activity of the transcriptional activator PEA3.

Authors:  Baoqiang Guo; Andrew D Sharrocks
Journal:  Mol Cell Biol       Date:  2009-03-23       Impact factor: 4.272

9.  MURC/Cavin-4 and cavin family members form tissue-specific caveolar complexes.

Authors:  Michele Bastiani; Libin Liu; Michelle M Hill; Mark P Jedrychowski; Susan J Nixon; Harriet P Lo; Daniel Abankwa; Robert Luetterforst; Manuel Fernandez-Rojo; Michael R Breen; Steven P Gygi; Jorgen Vinten; Piers J Walser; Kathryn N North; John F Hancock; Paul F Pilch; Robert G Parton
Journal:  J Cell Biol       Date:  2009-06-22       Impact factor: 10.539

10.  puma: a Bioconductor package for propagating uncertainty in microarray analysis.

Authors:  Richard D Pearson; Xuejun Liu; Guido Sanguinetti; Marta Milo; Neil D Lawrence; Magnus Rattray
Journal:  BMC Bioinformatics       Date:  2009-07-09       Impact factor: 3.169

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  19 in total

1.  Global Analysis of SUMO-Binding Proteins Identifies SUMOylation as a Key Regulator of the INO80 Chromatin Remodeling Complex.

Authors:  Eric Cox; Woochang Hwang; Ijeoma Uzoma; Jianfei Hu; Catherine M Guzzo; Junseop Jeong; Michael J Matunis; Jiang Qian; Heng Zhu; Seth Blackshaw
Journal:  Mol Cell Proteomics       Date:  2017-03-02       Impact factor: 5.911

2.  DUX-miR-344-ZMYM2-Mediated Activation of MERVL LTRs Induces a Totipotent 2C-like State.

Authors:  Fan Yang; Xin Huang; Ruge Zang; Jiayu Chen; Miguel Fidalgo; Carlos Sanchez-Priego; Jihong Yang; Alexander Caichen; Fanglin Ma; Todd Macfarlan; Huayan Wang; Shaorong Gao; Hongwei Zhou; Jianlong Wang
Journal:  Cell Stem Cell       Date:  2020-02-06       Impact factor: 24.633

3.  Microarray screening reveals two non-conventional SUMO-binding modules linked to DNA repair by non-homologous end-joining.

Authors:  Maria Jose Cabello-Lobato; Matthew Jenner; Metztli Cisneros-Aguirre; Kira Brüninghoff; Zac Sandy; Isabelle C da Costa; Thomas A Jowitt; Christian M Loch; Stephen P Jackson; Qian Wu; Henning D Mootz; Jeremy M Stark; Matthew J Cliff; Christine K Schmidt
Journal:  Nucleic Acids Res       Date:  2022-05-06       Impact factor: 19.160

4.  Defining the SUMO System in Maize: SUMOylation Is Up-Regulated during Endosperm Development and Rapidly Induced by Stress.

Authors:  Robert C Augustine; Samuel L York; Thérèse C Rytz; Richard D Vierstra
Journal:  Plant Physiol       Date:  2016-05-15       Impact factor: 8.340

Review 5.  Decrypting the crosstalk of noncoding RNAs in the progression of IPF.

Authors:  Yujuan Wang; Han Xiao; Fenglian Zhao; Han Li; Rong Gao; Bingdi Yan; Jin Ren; Junling Yang
Journal:  Mol Biol Rep       Date:  2020-03-16       Impact factor: 2.316

6.  SUMOylome Profiling Reveals a Diverse Array of Nuclear Targets Modified by the SUMO Ligase SIZ1 during Heat Stress.

Authors:  Thérèse C Rytz; Marcus J Miller; Fionn McLoughlin; Robert C Augustine; Richard S Marshall; Yu-Ting Juan; Yee-Yung Charng; Mark Scalf; Lloyd M Smith; Richard D Vierstra
Journal:  Plant Cell       Date:  2018-03-27       Impact factor: 11.277

7.  Mutations of the Transcriptional Corepressor ZMYM2 Cause Syndromic Urinary Tract Malformations.

Authors:  Dervla M Connaughton; Rufeng Dai; Danielle J Owen; Jonathan Marquez; Nina Mann; Adda L Graham-Paquin; Makiko Nakayama; Etienne Coyaud; Estelle M N Laurent; Jonathan R St-Germain; Lot Snijders Blok; Arianna Vino; Verena Klämbt; Konstantin Deutsch; Chen-Han Wilfred Wu; Caroline M Kolvenbach; Franziska Kause; Isabel Ottlewski; Ronen Schneider; Thomas M Kitzler; Amar J Majmundar; Florian Buerger; Ana C Onuchic-Whitford; Mao Youying; Amy Kolb; Daanya Salmanullah; Evan Chen; Amelie T van der Ven; Jia Rao; Hadas Ityel; Steve Seltzsam; Johanna M Rieke; Jing Chen; Asaf Vivante; Daw-Yang Hwang; Stefan Kohl; Gabriel C Dworschak; Tobias Hermle; Mariëlle Alders; Tobias Bartolomaeus; Stuart B Bauer; Michelle A Baum; Eva H Brilstra; Thomas D Challman; Jacob Zyskind; Carrie E Costin; Katrina M Dipple; Floor A Duijkers; Marcia Ferguson; David R Fitzpatrick; Roger Fick; Ian A Glass; Peter J Hulick; Antonie D Kline; Ilona Krey; Selvin Kumar; Weining Lu; Elysa J Marco; Ingrid M Wentzensen; Heather C Mefford; Konrad Platzer; Inna S Povolotskaya; Juliann M Savatt; Natalia V Shcherbakova; Prabha Senguttuvan; Audrey E Squire; Deborah R Stein; Isabelle Thiffault; Victoria Y Voinova; Michael J G Somers; Michael A Ferguson; Avram Z Traum; Ghaleb H Daouk; Ankana Daga; Nancy M Rodig; Paulien A Terhal; Ellen van Binsbergen; Loai A Eid; Velibor Tasic; Hila Milo Rasouly; Tze Y Lim; Dina F Ahram; Ali G Gharavi; Heiko M Reutter; Heidi L Rehm; Daniel G MacArthur; Monkol Lek; Kristen M Laricchia; Richard P Lifton; Hong Xu; Shrikant M Mane; Simone Sanna-Cherchi; Andrew D Sharrocks; Brian Raught; Simon E Fisher; Maxime Bouchard; Mustafa K Khokha; Shirlee Shril; Friedhelm Hildebrandt
Journal:  Am J Hum Genet       Date:  2020-09-04       Impact factor: 11.025

8.  ZBTB33 is mutated in clonal hematopoiesis and myelodysplastic syndromes and impacts RNA splicing.

Authors:  Siddhartha Jaiswal; Benjamin L Ebert; Ellen M Beauchamp; Matthew Leventhal; Elsa Bernard; Emma R Hoppe; Gabriele Todisco; Maria Creignou; Anna Gallì; Cecilia A Castellano; Marie McConkey; Akansha Tarun; Waihay Wong; Monica Schenone; Caroline Stanclift; Benjamin Tanenbaum; Edyta Malolepsza; Björn Nilsson; Alexander G Bick; Joshua S Weinstock; Mendy Miller; Abhishek Niroula; Andrew Dunford; Amaro Taylor-Weiner; Timothy Wood; Alex Barbera; Shankara Anand; Bruce M Psaty; Pinkal Desai; Michael H Cho; Andrew D Johnson; Ruth Loos; Daniel G MacArthur; Monkol Lek; Donna S Neuberg; Kasper Lage; Steven A Carr; Eva Hellstrom-Lindberg; Luca Malcovati; Elli Papaemmanuil; Chip Stewart; Gad Getz; Robert K Bradley
Journal:  Blood Cancer Discov       Date:  2021-07-14

Review 9.  SUMO, a small, but powerful, regulator of double-strand break repair.

Authors:  Alexander J Garvin; Joanna R Morris
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-10-05       Impact factor: 6.237

10.  Organization and Regulation of Soybean SUMOylation System under Abiotic Stress Conditions.

Authors:  Yanjun Li; Guixin Wang; Zeqian Xu; Jing Li; Mengwei Sun; Jingsong Guo; Wei Ji
Journal:  Front Plant Sci       Date:  2017-08-21       Impact factor: 5.753

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