Literature DB >> 26280329

Ultrahigh-throughput single-molecule spectroscopy and spectrally resolved super-resolution microscopy.

Zhengyang Zhang1,2, Samuel J Kenny1, Margaret Hauser1, Wan Li1, Ke Xu1,2.   

Abstract

By developing a wide-field scheme for spectral measurement and implementing photoswitching, we synchronously obtained the fluorescence spectra and positions of ∼10(6) single molecules in labeled cells in minutes, which consequently enabled spectrally resolved, 'true-color' super-resolution microscopy. The method, called spectrally resolved stochastic optical reconstruction microscopy (SR-STORM), achieved cross-talk-free three-dimensional (3D) imaging for four dyes 10 nm apart in emission spectrum. Excellent resolution was obtained for every channel, and 3D localizations of all molecules were automatically aligned within one imaging path.

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Year:  2015        PMID: 26280329     DOI: 10.1038/nmeth.3528

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  15 in total

Review 1.  Illuminating single molecules in condensed matter.

Authors:  W E Moerner; M Orrit
Journal:  Science       Date:  1999-03-12       Impact factor: 47.728

2.  Multicolor fluorescence nanoscopy in fixed and living cells by exciting conventional fluorophores with a single wavelength.

Authors:  Ilaria Testa; Christian A Wurm; Rebecca Medda; Ellen Rothermel; Claas von Middendorf; Jonas Fölling; Stefan Jakobs; Andreas Schönle; Stefan W Hell; Christian Eggeling
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

3.  Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM).

Authors:  Michael J Rust; Mark Bates; Xiaowei Zhuang
Journal:  Nat Methods       Date:  2006-08-09       Impact factor: 28.547

4.  Ultra-high resolution imaging by fluorescence photoactivation localization microscopy.

Authors:  Samuel T Hess; Thanu P K Girirajan; Michael D Mason
Journal:  Biophys J       Date:  2006-09-15       Impact factor: 4.033

5.  Multicolor super-resolution imaging with photo-switchable fluorescent probes.

Authors:  Mark Bates; Bo Huang; Graham T Dempsey; Xiaowei Zhuang
Journal:  Science       Date:  2007-08-16       Impact factor: 47.728

6.  Dual-color superresolution imaging of genetically expressed probes within individual adhesion complexes.

Authors:  Hari Shroff; Catherine G Galbraith; James A Galbraith; Helen White; Jennifer Gillette; Scott Olenych; Michael W Davidson; Eric Betzig
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-12       Impact factor: 11.205

7.  Subdiffraction-resolution fluorescence imaging with conventional fluorescent probes.

Authors:  Mike Heilemann; Sebastian van de Linde; Mark Schüttpelz; Robert Kasper; Britta Seefeldt; Anindita Mukherjee; Philip Tinnefeld; Markus Sauer
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

8.  Fluorescence nanoscopy by ground-state depletion and single-molecule return.

Authors:  Jonas Fölling; Mariano Bossi; Hannes Bock; Rebecca Medda; Christian A Wurm; Birka Hein; Stefan Jakobs; Christian Eggeling; Stefan W Hell
Journal:  Nat Methods       Date:  2008-09-15       Impact factor: 28.547

9.  Single-molecule methods leap ahead.

Authors:  Taekjip Ha
Journal:  Nat Methods       Date:  2014-10       Impact factor: 28.547

10.  Dual-objective STORM reveals three-dimensional filament organization in the actin cytoskeleton.

Authors:  Ke Xu; Hazen P Babcock; Xiaowei Zhuang
Journal:  Nat Methods       Date:  2012-01-08       Impact factor: 28.547

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  58 in total

1.  Covalent Protein Labeling and Improved Single-Molecule Optical Properties of Aqueous CdSe/CdS Quantum Dots.

Authors:  Sara M Wichner; Victor R Mann; Alexander S Powers; Maya A Segal; Mustafa Mir; Jigar N Bandaria; Mark A DeWitt; Xavier Darzacq; Ahmet Yildiz; Bruce E Cohen
Journal:  ACS Nano       Date:  2017-06-21       Impact factor: 15.881

2.  In Vivo Delivery and Activation of Masked Fluorogenic Hydrolase Substrates by Endogenous Hydrolases in C. elegans.

Authors:  Shataakshi Dube; Hitesh Dube; Nicole B Green; Erik M Larsen; Alex White; R Jeremy Johnson; Jennifer R Kowalski
Journal:  Chembiochem       Date:  2017-08-07       Impact factor: 3.164

3.  Excitation-multiplexed multicolor superresolution imaging with fm-STORM and fm-DNA-PAINT.

Authors:  Pablo A Gómez-García; Erik T Garbacik; Jason J Otterstrom; Maria F Garcia-Parajo; Melike Lakadamyali
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-03       Impact factor: 11.205

4.  RainbowSTORM: an open-source ImageJ plug-in for spectroscopic single-molecule localization microscopy (sSMLM) data analysis and image reconstruction.

Authors:  Janel L Davis; Brian Soetikno; Ki-Hee Song; Yang Zhang; Cheng Sun; Hao F Zhang
Journal:  Bioinformatics       Date:  2020-12-08       Impact factor: 6.937

5.  Sub-10-nm distance measurements between fluorophores using photon-accumulation enhanced reconstruction (PACER).

Authors:  Biqin Dong; Ki-Hee Song; Janel L Davis; Hao F Zhang; Cheng Sun
Journal:  Adv Photonics Res       Date:  2020-10-14

6.  Spatial and spectral imaging of point-spread functions using a spatial light modulator.

Authors:  Sravan Munagavalasa; Bryce Schroeder; Xuanwen Hua; Shu Jia
Journal:  Opt Commun       Date:  2017-07-25       Impact factor: 2.310

7.  Theoretical analysis of spectral precision in spectroscopic single-molecule localization microscopy.

Authors:  Ki-Hee Song; Biqin Dong; Cheng Sun; Hao F Zhang
Journal:  Rev Sci Instrum       Date:  2018-12       Impact factor: 1.523

8.  Machine-learning based spectral classification for spectroscopic single-molecule localization microscopy.

Authors:  Zheyuan Zhang; Yang Zhang; Leslie Ying; Cheng Sun; Hao F Zhang
Journal:  Opt Lett       Date:  2019-12-01       Impact factor: 3.776

9.  Simultaneous nano-tracking of multiple motor proteins via spectral discrimination of quantum dots.

Authors:  Taishi Kakizuka; Keigo Ikezaki; Junichi Kaneshiro; Hideaki Fujita; Tomonobu M Watanabe; Taro Ichimura
Journal:  Biomed Opt Express       Date:  2016-06-02       Impact factor: 3.732

10.  Super-Resolution Imaging of Self-Assembled Nanocarriers Using Quantitative Spectroscopic Analysis for Cluster Extraction.

Authors:  Janel L Davis; Yang Zhang; Sijia Yi; Fanfan Du; Ki-Hee Song; Evan A Scott; Cheng Sun; Hao F Zhang
Journal:  Langmuir       Date:  2020-02-25       Impact factor: 3.882

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