Literature DB >> 26280087

Extended O-GlcNAc on HLA Class-I-Bound Peptides.

Fabio Marino1,2, Marshall Bern3, Geert P M Mommen1,2,4, Aneika C Leney1,2, Jacqueline A M van Gaans-van den Brink5, Alexandre M J J Bonvin6, Christopher Becker3, Cécile A C M van Els5, Albert J R Heck1,2.   

Abstract

We report unexpected mass spectrometric observations of glycosylated human leukocyte antigen (HLA) class I-bound peptides. Complemented by molecular modeling, in vitro enzymatic assays, and oxonium ion patterns, we propose that the observed O-linked glycans carrying up to five monosaccharides are extended O-GlcNAc's rather than GalNAc-initiated O-glycans. A cytosolic O-GlcNAc modification is normally terminal and does not extend to produce a polysaccharide, but O-GlcNAc on an HLA peptide presents a special case because the loaded HLA class I complex traffics through the endoplasmic reticulum and Golgi apparatus on its way to the cell membrane and is hence exposed to glycosyltransferases. We also report for the first time natural HLA class I presentation of O- and N-linked glycopeptides derived from membrane proteins. HLA class I peptides with centrally located oligosaccharides have been shown to be immunogenic and may thus be important targets for immune surveillance.

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Year:  2015        PMID: 26280087      PMCID: PMC4603548          DOI: 10.1021/jacs.5b06586

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  32 in total

1.  Presentation of cytosolic glycosylated peptides by human class I major histocompatibility complex molecules in vivo.

Authors:  J S Haurum; I B Høier; G Arsequell; A Neisig; G Valencia; J Zeuthen; J Neefjes; T Elliott
Journal:  J Exp Med       Date:  1999-07-05       Impact factor: 14.307

2.  Lookup peaks: a hybrid of de novo sequencing and database search for protein identification by tandem mass spectrometry.

Authors:  Marshall Bern; Yuhan Cai; David Goldberg
Journal:  Anal Chem       Date:  2007-01-23       Impact factor: 6.986

3.  Toward full peptide sequence coverage by dual fragmentation combining electron-transfer and higher-energy collision dissociation tandem mass spectrometry.

Authors:  Christian K Frese; A F Maarten Altelaar; Henk van den Toorn; Dirk Nolting; Jens Griep-Raming; Albert J R Heck; Shabaz Mohammed
Journal:  Anal Chem       Date:  2012-10-31       Impact factor: 6.986

4.  T cell receptor recognition of a 'super-bulged' major histocompatibility complex class I-bound peptide.

Authors:  Fleur E Tynan; Scott R Burrows; Ashley M Buckle; Craig S Clements; Natalie A Borg; John J Miles; Travis Beddoe; James C Whisstock; Matthew C Wilce; Sharon L Silins; Jacqueline M Burrows; Lars Kjer-Nielsen; Lyudmila Kostenko; Anthony W Purcell; James McCluskey; Jamie Rossjohn
Journal:  Nat Immunol       Date:  2005-09-25       Impact factor: 25.606

5.  HCF-1 is cleaved in the active site of O-GlcNAc transferase.

Authors:  Michael B Lazarus; Jiaoyang Jiang; Vaibhav Kapuria; Tanja Bhuiyan; John Janetzko; Wesley F Zandberg; David J Vocadlo; Winship Herr; Suzanne Walker
Journal:  Science       Date:  2013-12-06       Impact factor: 47.728

Review 6.  Cancer immunotherapy with peptide-based vaccines: what have we achieved? Where are we going?

Authors:  Giorgio Parmiani; Chiara Castelli; Piero Dalerba; Roberta Mortarini; Licia Rivoltini; Francesco M Marincola; Andrea Anichini
Journal:  J Natl Cancer Inst       Date:  2002-06-05       Impact factor: 13.506

7.  System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.

Authors:  Kristoffer T G Rigbolt; Tatyana A Prokhorova; Vyacheslav Akimov; Jeanette Henningsen; Pia T Johansen; Irina Kratchmarova; Moustapha Kassem; Matthias Mann; Jesper V Olsen; Blagoy Blagoev
Journal:  Sci Signal       Date:  2011-03-15       Impact factor: 8.192

8.  The impact of a large and frequent deletion in the human TCR β locus on antiviral immunity.

Authors:  Rebekah M Brennan; Jan Petersen; Michelle A Neller; John J Miles; Jacqueline M Burrows; Corey Smith; James McCluskey; Rajiv Khanna; Jamie Rossjohn; Scott R Burrows
Journal:  J Immunol       Date:  2012-02-08       Impact factor: 5.422

9.  GlycoDelete engineering of mammalian cells simplifies N-glycosylation of recombinant proteins.

Authors:  Leander Meuris; Francis Santens; Greg Elson; Nele Festjens; Morgane Boone; Anaëlle Dos Santos; Simon Devos; François Rousseau; Evelyn Plets; Erica Houthuys; Pauline Malinge; Giovanni Magistrelli; Laura Cons; Laurence Chatel; Bart Devreese; Nico Callewaert
Journal:  Nat Biotechnol       Date:  2014-04-20       Impact factor: 54.908

10.  Into the intracellular logistics of cross-presentation.

Authors:  Jacques Neefjes; Charlotte Sadaka
Journal:  Front Immunol       Date:  2012-02-28       Impact factor: 7.561

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  32 in total

1.  A Molecular Basis for the Presentation of Phosphorylated Peptides by HLA-B Antigens.

Authors:  Adán Alpízar; Fabio Marino; Antonio Ramos-Fernández; Manuel Lombardía; Anita Jeko; Florencio Pazos; Alberto Paradela; César Santiago; Albert J R Heck; Miguel Marcilla
Journal:  Mol Cell Proteomics       Date:  2016-12-05       Impact factor: 5.911

2.  Elucidating crosstalk mechanisms between phosphorylation and O-GlcNAcylation.

Authors:  Aneika C Leney; Dris El Atmioui; Wei Wu; Huib Ovaa; Albert J R Heck
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-14       Impact factor: 11.205

Review 3.  Analysis of Mammalian O-Glycopeptides-We Have Made a Good Start, but There is a Long Way to Go.

Authors:  Zsuzsanna Darula; Katalin F Medzihradszky
Journal:  Mol Cell Proteomics       Date:  2017-11-21       Impact factor: 5.911

4.  Electron-Transfer/Higher-Energy Collision Dissociation (EThcD)-Enabled Intact Glycopeptide/Glycoproteome Characterization.

Authors:  Qing Yu; Bowen Wang; Zhengwei Chen; Go Urabe; Matthew S Glover; Xudong Shi; Lian-Wang Guo; K Craig Kent; Lingjun Li
Journal:  J Am Soc Mass Spectrom       Date:  2017-07-10       Impact factor: 3.109

5.  The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases.

Authors:  Juan Antonio Vizcaíno; Peter Kubiniok; Kevin A Kovalchik; Qing Ma; Jérôme D Duquette; Ian Mongrain; Eric W Deutsch; Bjoern Peters; Alessandro Sette; Isabelle Sirois; Etienne Caron
Journal:  Mol Cell Proteomics       Date:  2019-11-19       Impact factor: 5.911

Review 6.  Liquid chromatography-tandem mass spectrometry-based fragmentation analysis of glycopeptides.

Authors:  Jonas Nilsson
Journal:  Glycoconj J       Date:  2016-01-18       Impact factor: 2.916

7.  Site-specific characterization and quantitation of N-glycopeptides in PKM2 knockout breast cancer cells using DiLeu isobaric tags enabled by electron-transfer/higher-energy collision dissociation (EThcD).

Authors:  Zhengwei Chen; Qing Yu; Ling Hao; Fabao Liu; Jillian Johnson; Zichuan Tian; W John Kao; Wei Xu; Lingjun Li
Journal:  Analyst       Date:  2018-05-29       Impact factor: 4.616

Review 8.  Deciphering the Functions of Protein O-GlcNAcylation with Chemistry.

Authors:  Matthew Worth; Hao Li; Jiaoyang Jiang
Journal:  ACS Chem Biol       Date:  2017-01-19       Impact factor: 5.100

9.  Targeted Mass Spectrometry Approach Enabled Discovery of O-Glycosylated Insulin and Related Signaling Peptides in Mouse and Human Pancreatic Islets.

Authors:  Qing Yu; Alejandra Canales; Matthew S Glover; Rahul Das; Xudong Shi; Yang Liu; Mark P Keller; Alan D Attie; Lingjun Li
Journal:  Anal Chem       Date:  2017-08-07       Impact factor: 6.986

10.  Specific Identification of Glycoproteins Bearing the Tn Antigen in Human Cells.

Authors:  Jiangnan Zheng; Haopeng Xiao; Ronghu Wu
Journal:  Angew Chem Int Ed Engl       Date:  2017-05-17       Impact factor: 15.336

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