Literature DB >> 26279944

Crystal structure of 3,9,9-trimethyl-2,3,3a,4,9,9a-hexa-hydro-1H-cyclo-penta[b]quinolin-4-ium chloride.

G Sridhar1, I Mohammed Bilal1, D Easwaramoorthy1, S Kutti Rani1, K Anand Solomon2.   

Abstract

The title mol-ecular salt, C15H22N(+)·Cl(-), arose as an unexpected product of the reaction between aniline and melanol in the presence of HCl. The central heterocyclic ring has a half-chair conformation and the five-membered ring has an envelope conformation, with the C atom linked to the N atom as the flap. In the crystal, the ions are linked by N-H⋯Cl hydrogen bonds, generating chains propagating in the [100] direction. The crystal studied was a merohedral twin with a 0.64 (3):0.36 (3) domain ratio.

Entities:  

Keywords:  N—H⋯Cl hydrogen bonds; crystal structure; quinoline

Year:  2015        PMID: 26279944      PMCID: PMC4518934          DOI: 10.1107/S2056989015011858

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For biological background, see: Szymański et al. (2012 ▸). For further synthetic details, see: Alaghaz et al. (2014 ▸).

Experimental

Crystal data

C15H22N+·Cl− M = 251.78 Orthorhombic, a = 7.0291 (5) Å b = 10.3313 (8) Å c = 18.9425 (14) Å V = 1375.60 (18) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 298 K 0.35 × 0.30 × 0.30 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer 7372 measured reflections 3334 independent reflections 3013 reflections with I > 2σ(I) R int = 0.028 Standard reflections: 0

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.123 S = 0.95 3334 reflections 165 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.23 e Å−3 Absolute structure: Flack x determined using 1165 quotients [(I +)−(I −)]/[(I +)+(I −)] (Parsons et al., 2013 ▸) Absolute structure parameter: 0.36 (3)

Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS7 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014/7 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and Mercury (Macrae et al., 2008 ▸); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015011858/hb7450sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015011858/hb7450Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015011858/hb7450Isup3.cml Click here for additional data file. ORTEP . DOI: 10.1107/S2056989015011858/hb7450fig1.tif ORTEP diagram of the title compound drawn at 30% probability Click here for additional data file. . DOI: 10.1107/S2056989015011858/hb7450fig2.tif Packing diagram of the mol­ecule viewed down ’b′ axis CCDC reference: 1407884 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H22N+·ClDx = 1.216 Mg m3
Mr = 251.78Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 25 reflections
a = 7.0291 (5) Åθ = 2.0–25°
b = 10.3313 (8) ŵ = 0.26 mm1
c = 18.9425 (14) ÅT = 298 K
V = 1375.60 (18) Å3Block, colourless
Z = 40.35 × 0.30 × 0.30 mm
F(000) = 544
Oxford Diffraction Xcalibur Sapphire3 diffractometerRint = 0.028
ω scansθmax = 28.5°, θmin = 2.2°
7372 measured reflectionsh = −9→9
3334 independent reflectionsk = −13→9
3013 reflections with I > 2σ(I)l = −10→24
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.039w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.123(Δ/σ)max < 0.001
S = 0.95Δρmax = 0.26 e Å3
3334 reflectionsΔρmin = −0.23 e Å3
165 parametersAbsolute structure: Flack x determined using 1165 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
0 restraintsAbsolute structure parameter: 0.36 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Cl10.15461 (9)0.64944 (6)0.56931 (3)0.0429 (2)
N10.4133 (3)0.60045 (17)0.43815 (9)0.0287 (4)
C20.5014 (3)0.4292 (2)0.31431 (12)0.0311 (5)
C30.6364 (3)0.4629 (2)0.37502 (12)0.0306 (4)
H30.69580.54580.36300.037*
C40.3378 (3)0.5258 (2)0.31593 (10)0.0282 (4)
C50.2938 (3)0.6012 (2)0.37467 (11)0.0272 (4)
C60.5333 (3)0.4825 (2)0.44441 (11)0.0284 (4)
H60.45190.40740.45390.034*
C70.1374 (3)0.6827 (2)0.37588 (13)0.0360 (5)
H70.11040.73080.41620.043*
C80.0217 (3)0.6927 (3)0.31749 (14)0.0409 (6)
H8−0.08350.74730.31810.049*
C90.6887 (4)0.4896 (2)0.49987 (12)0.0377 (5)
H90.74890.57500.49750.045*
C100.7987 (4)0.3694 (3)0.39459 (15)0.0497 (7)
H10A0.76300.28060.38440.060*
H10B0.91330.39010.36840.060*
C110.2179 (3)0.5383 (3)0.25764 (12)0.0375 (5)
H110.24270.48970.21730.045*
C120.0635 (3)0.6210 (3)0.25812 (14)0.0420 (6)
H12−0.01270.62830.21820.050*
C130.6117 (4)0.4384 (3)0.24472 (13)0.0463 (6)
H13A0.64500.52710.23590.070*
H13B0.53380.40680.20680.070*
H13C0.72540.38730.24790.070*
C140.6223 (4)0.4657 (3)0.57507 (13)0.0518 (7)
H14A0.53010.53000.58790.078*
H14B0.72910.47070.60650.078*
H14C0.56590.38130.57830.078*
C150.4183 (5)0.2923 (2)0.32124 (16)0.0508 (7)
H15A0.52010.23050.32400.076*
H15B0.34070.27360.28080.076*
H15C0.34230.28710.36320.076*
C160.8301 (5)0.3879 (3)0.47281 (15)0.0598 (8)
H16A0.95940.41650.48150.072*
H16B0.81070.30660.49740.072*
H1A0.334 (6)0.613 (4)0.4846 (18)0.079 (11)*
H1B0.490 (4)0.673 (3)0.4388 (16)0.047 (8)*
U11U22U33U12U13U23
Cl10.0449 (3)0.0503 (3)0.0335 (3)0.0088 (3)0.0067 (2)0.0008 (3)
N10.0305 (8)0.0319 (8)0.0238 (9)0.0006 (7)−0.0019 (7)−0.0030 (7)
C20.0361 (10)0.0296 (10)0.0275 (11)0.0002 (8)0.0007 (8)−0.0042 (8)
C30.0310 (10)0.0334 (10)0.0275 (11)0.0030 (8)0.0009 (8)−0.0018 (8)
C40.0277 (9)0.0315 (9)0.0255 (10)−0.0056 (9)0.0017 (8)−0.0010 (8)
C50.0273 (9)0.0319 (9)0.0223 (10)−0.0029 (7)−0.0007 (7)0.0001 (8)
C60.0324 (10)0.0280 (9)0.0247 (10)0.0000 (8)−0.0022 (7)0.0014 (8)
C70.0354 (11)0.0402 (11)0.0324 (11)0.0052 (9)0.0016 (9)−0.0012 (9)
C80.0300 (10)0.0514 (14)0.0412 (14)0.0054 (10)−0.0023 (9)0.0065 (11)
C90.0411 (12)0.0390 (11)0.0330 (11)0.0053 (10)−0.0102 (9)−0.0005 (10)
C100.0461 (13)0.0571 (16)0.0460 (15)0.0197 (12)−0.0060 (11)−0.0060 (13)
C110.0375 (11)0.0471 (13)0.0278 (11)−0.0064 (10)−0.0034 (9)−0.0041 (10)
C120.0338 (10)0.0564 (15)0.0358 (12)−0.0054 (11)−0.0087 (9)0.0064 (11)
C130.0475 (14)0.0614 (16)0.0301 (12)0.0111 (12)0.0061 (10)−0.0058 (12)
C140.0647 (17)0.0607 (16)0.0299 (13)0.0123 (14)−0.0096 (12)0.0050 (12)
C150.0624 (16)0.0310 (11)0.0591 (19)−0.0069 (12)−0.0096 (14)−0.0063 (12)
C160.0581 (16)0.078 (2)0.0430 (15)0.0322 (17)−0.0127 (13)−0.0071 (15)
N1—C51.467 (3)C9—C141.519 (3)
N1—C61.487 (3)C9—C161.534 (4)
N1—H1A1.05 (4)C9—H90.9800
N1—H1B0.93 (3)C10—C161.510 (4)
C2—C41.523 (3)C10—H10A0.9700
C2—C31.531 (3)C10—H10B0.9700
C2—C131.532 (3)C11—C121.381 (3)
C2—C151.536 (3)C11—H110.9300
C3—C61.515 (3)C12—H120.9300
C3—C101.540 (3)C13—H13A0.9600
C3—H30.9800C13—H13B0.9600
C4—C51.393 (3)C13—H13C0.9600
C4—C111.395 (3)C14—H14A0.9600
C5—C71.386 (3)C14—H14B0.9600
C6—C91.518 (3)C14—H14C0.9600
C6—H60.9800C15—H15A0.9600
C7—C81.376 (3)C15—H15B0.9600
C7—H70.9300C15—H15C0.9600
C8—C121.378 (4)C16—H16A0.9700
C8—H80.9300C16—H16B0.9700
C5—N1—C6113.23 (16)C6—C9—H9108.8
C5—N1—H1A112 (2)C14—C9—H9108.8
C6—N1—H1A110 (2)C16—C9—H9108.8
C5—N1—H1B109.9 (18)C16—C10—C3105.4 (2)
C6—N1—H1B109.6 (18)C16—C10—H10A110.7
H1A—N1—H1B102 (3)C3—C10—H10A110.7
C4—C2—C3107.70 (17)C16—C10—H10B110.7
C4—C2—C13111.01 (19)C3—C10—H10B110.7
C3—C2—C13108.59 (19)H10A—C10—H10B108.8
C4—C2—C15108.32 (18)C12—C11—C4121.8 (2)
C3—C2—C15112.4 (2)C12—C11—H11119.1
C13—C2—C15108.9 (2)C4—C11—H11119.1
C6—C3—C2112.69 (18)C8—C12—C11120.3 (2)
C6—C3—C10103.27 (18)C8—C12—H12119.8
C2—C3—C10119.81 (19)C11—C12—H12119.8
C6—C3—H3106.8C2—C13—H13A109.5
C2—C3—H3106.8C2—C13—H13B109.5
C10—C3—H3106.8H13A—C13—H13B109.5
C5—C4—C11116.5 (2)C2—C13—H13C109.5
C5—C4—C2123.37 (19)H13A—C13—H13C109.5
C11—C4—C2120.08 (19)H13B—C13—H13C109.5
C7—C5—C4122.0 (2)C9—C14—H14A109.5
C7—C5—N1116.36 (19)C9—C14—H14B109.5
C4—C5—N1121.67 (18)H14A—C14—H14B109.5
N1—C6—C3108.17 (16)C9—C14—H14C109.5
N1—C6—C9115.09 (18)H14A—C14—H14C109.5
C3—C6—C9105.22 (18)H14B—C14—H14C109.5
N1—C6—H6109.4C2—C15—H15A109.5
C3—C6—H6109.4C2—C15—H15B109.5
C9—C6—H6109.4H15A—C15—H15B109.5
C8—C7—C5120.1 (2)C2—C15—H15C109.5
C8—C7—H7120.0H15A—C15—H15C109.5
C5—C7—H7120.0H15B—C15—H15C109.5
C7—C8—C12119.3 (2)C10—C16—C9108.7 (2)
C7—C8—H8120.3C10—C16—H16A110.0
C12—C8—H8120.3C9—C16—H16A110.0
C6—C9—C14114.8 (2)C10—C16—H16B110.0
C6—C9—C16101.64 (19)C9—C16—H16B110.0
C14—C9—C16113.6 (2)H16A—C16—H16B108.3
C4—C2—C3—C648.4 (2)C2—C3—C6—N1−66.8 (2)
C13—C2—C3—C6168.67 (19)C10—C3—C6—N1162.49 (19)
C15—C2—C3—C6−70.8 (2)C2—C3—C6—C9169.71 (19)
C4—C2—C3—C10170.1 (2)C10—C3—C6—C939.0 (2)
C13—C2—C3—C10−69.6 (3)C4—C5—C7—C8−1.1 (3)
C15—C2—C3—C1050.9 (3)N1—C5—C7—C8177.7 (2)
C3—C2—C4—C5−17.9 (3)C5—C7—C8—C120.0 (4)
C13—C2—C4—C5−136.7 (2)N1—C6—C9—C1479.9 (3)
C15—C2—C4—C5103.8 (2)C3—C6—C9—C14−161.2 (2)
C3—C2—C4—C11164.75 (19)N1—C6—C9—C16−157.0 (2)
C13—C2—C4—C1146.0 (3)C3—C6—C9—C16−38.0 (2)
C15—C2—C4—C11−73.5 (3)C6—C3—C10—C16−23.7 (3)
C11—C4—C5—C71.2 (3)C2—C3—C10—C16−150.0 (3)
C2—C4—C5—C7−176.2 (2)C5—C4—C11—C12−0.1 (3)
C11—C4—C5—N1−177.55 (19)C2—C4—C11—C12177.3 (2)
C2—C4—C5—N15.1 (3)C7—C8—C12—C111.1 (4)
C6—N1—C5—C7159.69 (19)C4—C11—C12—C8−1.0 (4)
C6—N1—C5—C4−21.5 (3)C3—C10—C16—C90.4 (3)
C5—N1—C6—C350.1 (2)C6—C9—C16—C1022.9 (3)
C5—N1—C6—C9167.43 (18)C14—C9—C16—C10146.8 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Cl11.05 (4)2.07 (4)3.1201 (19)173 (3)
N1—H1B···Cl1i0.93 (3)2.17 (3)3.0943 (19)174 (3)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1ACl11.05(4)2.07(4)3.1201(19)173(3)
N1H1BCl1i 0.93(3)2.17(3)3.0943(19)174(3)

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

3.  2,3-dihydro-1H-cyclopenta[b]quinoline derivatives as acetylcholinesterase inhibitors-synthesis, radiolabeling and biodistribution.

Authors:  Paweł Szymański; Alice Lázničková; Milan Lázniček; Marek Bajda; Barbara Malawska; Magdalena Markowicz; Elżbieta Mikiciuk-Olasik
Journal:  Int J Mol Sci       Date:  2012-08-13       Impact factor: 6.208

4.  Use of intensity quotients and differences in absolute structure refinement.

Authors:  Simon Parsons; Howard D Flack; Trixie Wagner
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2013-05-17
  4 in total

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