| Literature DB >> 26279882 |
Sergey Lindeman1, Nathaniel J Wallock1, William A Donaldson1.
Abstract
The title compound, C6H9NO4·H2O [systematic name: (αR,1R,2S)-rel-α-amino-2-carb-oxy-cyclo-propane-acetic acid monohydrate], crystallizes with two organic mol-ecules and two water mol-ecules in the asymmetric unit. The space group is P21 and the organic mol-ecules are enanti-omers, thus this is an example of a 'false conglomerate' with two mol-ecules of opposite handedness in the asymmetric unit (r.m.s. overlay fit = 0.056 Å for one mol-ecule and its inverted partner). Each mol-ecule exists as a zwitterion, with proton transfer from the amino acid carb-oxy-lic acid group to the amine group. In the crystal, the components are linked by N-H⋯O and O-H⋯O hydrogen bonds, generating (100) sheets. Conformationally restricted glutamate analogs are of inter-est due to their selective activation of different glutamate receptors, and the naturally occurring (+)-CCG-III is an inhibitor of glutamate uptake and the key geometrical parameters are discussed.Entities:
Keywords: conformationally restricted glutamate analog; crystal structure; cyclopropane
Year: 2015 PMID: 26279882 PMCID: PMC4518997 DOI: 10.1107/S2056989015011500
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Structures of the diastereomers of 2-(2′-carboxycyclopropyl)glycine.
Figure 2The asymmetic unit of the title compound, showing 50% displacement ellipsoids.
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| N1H1 | 0.94(2) | 2.03(2) | 2.9444(18) | 162.1(17) |
| N1H1 | 0.86(2) | 2.39(2) | 2.9454(18) | 123.1(16) |
| N1H1 | 0.98(3) | 1.83(3) | 2.795(2) | 167(2) |
| O4H4O1iii | 0.81(3) | 1.79(3) | 2.5851(18) | 166(3) |
| O1 | 0.82(3) | 2.01(3) | 2.8072(19) | 166(2) |
| O1 | 0.86(2) | 1.90(2) | 2.7449(16) | 169(2) |
| N1 | 0.90(2) | 2.01(2) | 2.9087(18) | 173(2) |
| N1 | 0.87(2) | 2.38(2) | 3.1151(19) | 141.7(17) |
| N1 | 0.93(2) | 1.87(2) | 2.785(2) | 165.6(18) |
| O4 | 0.98(3) | 1.60(3) | 2.5672(16) | 168(2) |
| O1 | 0.83(3) | 2.07(3) | 2.8628(19) | 158(2) |
| O1 | 0.81(2) | 1.98(3) | 2.7717(17) | 166(3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .
Figure 3The packing for the title compound viewed approximately down [100], with hydrogen bonds shown as dashed lines.
Experimental details
| Crystal data | |
| Chemical formula | C6H9NO4H2O |
|
| 177.16 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 8.9688(8), 8.0063(8), 10.9628(10) |
| () | 106.015(4) |
|
| 756.65(12) |
|
| 4 |
| Radiation type | Cu |
| (mm1) | 1.18 |
| Crystal size (mm) | 0.37 0.32 0.10 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD detector |
| Absorption correction | Multi-scan ( |
|
| 0.669, 0.891 |
| No. of measured, independent and observed [ | 6086, 2164, 2154 |
|
| 0.018 |
| max () | 61.0 |
| (sin /)max (1) | 0.567 |
| Refinement | |
|
| 0.021, 0.055, 1.06 |
| No. of reflections | 2164 |
| No. of parameters | 305 |
| No. of restraints | 1 |
| H-atom treatment | All H-atom parameters refined |
| max, min (e 3) | 0.15, 0.16 |
| Absolute structure | Flack (1983 |
| Absolute structure parameter | 0.57(15) |
Computer programs: APEX2 and SAINT (Bruker, 2005 ▸), SHELXTL and SHELXL97 (Sheldrick, 2008 ▸).
| C6H9NO4·H2O | |
| Monoclinic, | Cu |
| Cell parameters from 5577 reflections | |
| θ = 4–61° | |
| µ = 1.18 mm−1 | |
| β = 106.015 (4)° | |
| Plate, colorless | |
| 0.37 × 0.32 × 0.10 mm |
| Bruker APEXII CCD detector diffractometer | 2164 independent reflections |
| Radiation source: fine-focus sealed tube | 2154 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 61.0°, θmin = 4.2° |
| Absorption correction: multi-scan ( | |
| 6086 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| All H-atom parameters refined | |
| (Δ/σ)max < 0.001 | |
| 2164 reflections | Δρmax = 0.15 e Å−3 |
| 305 parameters | Δρmin = −0.16 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 836 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.57 (15) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.16905 (12) | −0.14281 (15) | 0.09397 (9) | 0.0171 (3) | |
| O2 | 0.16680 (12) | −0.14746 (15) | −0.11118 (10) | 0.0182 (3) | |
| O3 | 0.17732 (12) | 0.43933 (15) | 0.13921 (10) | 0.0179 (3) | |
| O4 | 0.36153 (14) | 0.61213 (15) | 0.11160 (11) | 0.0187 (3) | |
| N1 | 0.10810 (17) | 0.18398 (19) | −0.14010 (12) | 0.0163 (3) | |
| C1 | 0.34487 (17) | 0.1610 (2) | 0.03879 (15) | 0.0167 (3) | |
| C2 | 0.40767 (18) | 0.3278 (2) | 0.10039 (15) | 0.0169 (3) | |
| C3 | 0.42184 (19) | 0.1692 (3) | 0.17765 (16) | 0.0203 (4) | |
| C4 | 0.17508 (18) | 0.1174 (2) | −0.00932 (14) | 0.0147 (4) | |
| C5 | 0.16579 (16) | −0.0746 (2) | −0.01143 (14) | 0.0143 (4) | |
| C6 | 0.30359 (18) | 0.4620 (2) | 0.11880 (14) | 0.0139 (4) | |
| H1A | 0.150 (2) | 0.128 (3) | −0.1987 (17) | 0.020 (5)* | |
| H1B | 0.010 (3) | 0.166 (3) | −0.1641 (18) | 0.029 (5)* | |
| H1C | 0.131 (3) | 0.303 (4) | −0.143 (2) | 0.050 (7)* | |
| H4 | 0.297 (3) | 0.681 (4) | 0.115 (2) | 0.044 (7)* | |
| H1 | 0.407 (2) | 0.114 (2) | −0.0118 (16) | 0.020 (5)* | |
| H2 | 0.499 (2) | 0.364 (2) | 0.0793 (15) | 0.017 (4)* | |
| H3A | 0.522 (2) | 0.127 (3) | 0.2107 (17) | 0.020 (4)* | |
| H3B | 0.354 (2) | 0.154 (3) | 0.2312 (15) | 0.017 (4)* | |
| H4A | 0.1176 (17) | 0.159 (3) | 0.0430 (14) | 0.006 (4)* | |
| O1W | 0.15198 (15) | −0.01307 (17) | 0.32148 (12) | 0.0218 (3) | |
| H1WA | 0.152 (3) | −0.106 (3) | 0.352 (2) | 0.038 (7)* | |
| H1WB | 0.149 (2) | −0.042 (3) | 0.246 (2) | 0.034 (6)* | |
| O1A | 0.81679 (12) | 1.13479 (15) | 0.40666 (10) | 0.0161 (3) | |
| O2A | 0.86473 (13) | 1.14792 (16) | 0.61824 (10) | 0.0175 (3) | |
| O3A | 0.80378 (12) | 0.55765 (16) | 0.36274 (10) | 0.0177 (3) | |
| O4A | 0.63822 (12) | 0.38208 (15) | 0.41642 (10) | 0.0162 (3) | |
| N1A | 0.92671 (16) | 0.8177 (2) | 0.64801 (12) | 0.0142 (3) | |
| C1A | 0.66918 (17) | 0.8314 (2) | 0.49476 (14) | 0.0144 (4) | |
| C2A | 0.59847 (17) | 0.6653 (2) | 0.44103 (14) | 0.0156 (3) | |
| C3A | 0.56440 (18) | 0.8249 (2) | 0.36381 (16) | 0.0173 (4) | |
| C4A | 0.83802 (17) | 0.8786 (2) | 0.51986 (14) | 0.0133 (4) | |
| C5A | 0.84454 (16) | 1.0708 (2) | 0.51702 (14) | 0.0129 (4) | |
| C6A | 0.69085 (18) | 0.5329 (2) | 0.40323 (13) | 0.0149 (4) | |
| H1AA | 0.892 (2) | 0.864 (3) | 0.710 (2) | 0.028 (5)* | |
| H1AB | 1.025 (2) | 0.842 (3) | 0.6644 (16) | 0.018 (4)* | |
| H1AC | 0.917 (2) | 0.703 (3) | 0.6570 (18) | 0.024 (5)* | |
| H4AA | 0.709 (3) | 0.295 (3) | 0.404 (2) | 0.044 (6)* | |
| H1AD | 0.6284 (17) | 0.868 (2) | 0.5597 (16) | 0.008 (4)* | |
| H2A | 0.522 (2) | 0.630 (2) | 0.4774 (15) | 0.013 (4)* | |
| H3AA | 0.6122 (17) | 0.830 (3) | 0.2982 (15) | 0.006 (4)* | |
| H3AB | 0.465 (2) | 0.868 (2) | 0.3501 (14) | 0.011 (4)* | |
| H4AB | 0.8848 (19) | 0.827 (3) | 0.4588 (16) | 0.016 (4)* | |
| O1WA | 0.79114 (15) | 1.00902 (16) | 0.16619 (12) | 0.0216 (3) | |
| H1WC | 0.796 (3) | 1.099 (3) | 0.130 (2) | 0.041 (7)* | |
| H1WD | 0.804 (3) | 1.030 (3) | 0.241 (2) | 0.041 (7)* |
| O1 | 0.0227 (6) | 0.0139 (7) | 0.0160 (6) | 0.0011 (5) | 0.0077 (4) | 0.0020 (5) |
| O2 | 0.0242 (6) | 0.0144 (7) | 0.0163 (6) | 0.0019 (5) | 0.0061 (4) | −0.0010 (5) |
| O3 | 0.0197 (6) | 0.0162 (7) | 0.0203 (6) | −0.0010 (5) | 0.0093 (5) | −0.0007 (5) |
| O4 | 0.0202 (6) | 0.0130 (7) | 0.0240 (6) | −0.0006 (5) | 0.0082 (5) | −0.0009 (5) |
| N1 | 0.0187 (8) | 0.0155 (9) | 0.0154 (7) | 0.0016 (7) | 0.0057 (6) | 0.0006 (6) |
| C1 | 0.0181 (8) | 0.0125 (9) | 0.0217 (8) | 0.0024 (7) | 0.0090 (6) | 0.0006 (8) |
| C2 | 0.0145 (7) | 0.0144 (9) | 0.0217 (8) | −0.0031 (7) | 0.0051 (6) | 0.0013 (7) |
| C3 | 0.0160 (8) | 0.0160 (9) | 0.0258 (9) | −0.0004 (8) | 0.0006 (7) | 0.0015 (8) |
| C4 | 0.0188 (8) | 0.0143 (10) | 0.0129 (8) | 0.0016 (7) | 0.0075 (7) | 0.0003 (6) |
| C5 | 0.0116 (7) | 0.0148 (10) | 0.0164 (9) | 0.0006 (7) | 0.0036 (6) | −0.0009 (7) |
| C6 | 0.0180 (9) | 0.0130 (9) | 0.0098 (7) | −0.0023 (7) | 0.0022 (6) | 0.0011 (6) |
| O1W | 0.0361 (7) | 0.0127 (7) | 0.0171 (6) | 0.0008 (6) | 0.0081 (5) | −0.0008 (5) |
| O1A | 0.0212 (6) | 0.0127 (7) | 0.0160 (5) | 0.0013 (5) | 0.0080 (4) | 0.0014 (5) |
| O2A | 0.0230 (6) | 0.0144 (6) | 0.0145 (5) | 0.0006 (5) | 0.0039 (4) | −0.0032 (5) |
| O3A | 0.0196 (6) | 0.0160 (7) | 0.0203 (6) | −0.0017 (5) | 0.0099 (5) | −0.0011 (5) |
| O4A | 0.0178 (5) | 0.0092 (7) | 0.0228 (6) | −0.0013 (5) | 0.0074 (5) | 0.0003 (5) |
| N1A | 0.0147 (7) | 0.0116 (9) | 0.0170 (7) | 0.0001 (6) | 0.0057 (6) | −0.0005 (6) |
| C1A | 0.0184 (8) | 0.0107 (9) | 0.0159 (8) | 0.0015 (7) | 0.0076 (6) | 0.0018 (7) |
| C2A | 0.0143 (8) | 0.0151 (9) | 0.0177 (7) | −0.0001 (7) | 0.0050 (6) | 0.0011 (7) |
| C3A | 0.0144 (8) | 0.0155 (10) | 0.0215 (8) | 0.0015 (7) | 0.0044 (7) | 0.0006 (7) |
| C4A | 0.0154 (8) | 0.0112 (10) | 0.0140 (8) | 0.0005 (7) | 0.0052 (6) | −0.0006 (6) |
| C5A | 0.0101 (7) | 0.0131 (10) | 0.0166 (9) | 0.0004 (7) | 0.0056 (6) | 0.0011 (7) |
| C6A | 0.0155 (8) | 0.0163 (10) | 0.0108 (7) | −0.0012 (7) | 0.0000 (6) | 0.0015 (7) |
| O1WA | 0.0342 (7) | 0.0147 (7) | 0.0160 (6) | 0.0014 (6) | 0.0068 (5) | −0.0003 (6) |
| O1—C5 | 1.271 (2) | O1A—C5A | 1.273 (2) |
| O2—C5 | 1.2417 (19) | O2A—C5A | 1.239 (2) |
| O3—C6 | 1.2270 (19) | O3A—C6A | 1.2289 (19) |
| O4—C6 | 1.320 (2) | O4A—C6A | 1.319 (2) |
| O4—H4 | 0.81 (3) | O4A—H4AA | 0.98 (3) |
| N1—C4 | 1.492 (2) | N1A—C4A | 1.492 (2) |
| N1—H1A | 0.94 (2) | N1A—H1AA | 0.90 (2) |
| N1—H1B | 0.86 (2) | N1A—H1AB | 0.87 (2) |
| N1—H1C | 0.98 (3) | N1A—H1AC | 0.93 (2) |
| C1—C2 | 1.532 (3) | C1A—C2A | 1.520 (3) |
| C1—C3 | 1.489 (2) | C1A—C3A | 1.484 (2) |
| C1—C4 | 1.509 (2) | C1A—C4A | 1.510 (2) |
| C1—H1 | 0.963 (19) | C1A—H1AD | 0.933 (17) |
| C2—C3 | 1.512 (3) | C2A—C3A | 1.516 (2) |
| C2—C6 | 1.473 (2) | C2A—C6A | 1.474 (3) |
| C2—H2 | 0.953 (18) | C2A—H2A | 0.925 (17) |
| C3—H3A | 0.93 (2) | C3A—H3AA | 0.934 (16) |
| C3—H3B | 0.965 (18) | C3A—H3AB | 0.929 (18) |
| C4—C5 | 1.539 (2) | C4A—C5A | 1.541 (2) |
| C4—H4A | 0.932 (17) | C4A—H4AB | 0.976 (19) |
| O1W—H1WA | 0.82 (3) | O1WA—H1WC | 0.83 (3) |
| O1W—H1WB | 0.86 (2) | O1WA—H1WD | 0.81 (2) |
| C6—O4—H4 | 108.5 (19) | C6A—O4A—H4AA | 111.5 (14) |
| C4—N1—H1A | 110.8 (12) | C4A—N1A—H1AA | 111.9 (13) |
| C4—N1—H1B | 110.0 (14) | C4A—N1A—H1AB | 111.6 (12) |
| C4—N1—H1C | 110.3 (14) | C4A—N1A—H1AC | 112.4 (11) |
| H1A—N1—H1B | 106.2 (19) | H1AA—N1A—H1AB | 107.1 (18) |
| H1A—N1—H1C | 108.4 (19) | H1AA—N1A—H1AC | 105 (2) |
| H1B—N1—H1C | 111 (2) | H1AB—N1A—H1AC | 108.5 (19) |
| C2—C1—H1 | 113.3 (11) | C2A—C1A—H1AD | 111.2 (10) |
| C3—C1—C2 | 60.03 (12) | C3A—C1A—C2A | 60.61 (11) |
| C3—C1—C4 | 120.41 (14) | C3A—C1A—C4A | 121.37 (13) |
| C3—C1—H1 | 115.3 (10) | C3A—C1A—H1AD | 118.2 (9) |
| C4—C1—C2 | 124.66 (14) | C4A—C1A—C2A | 125.40 (14) |
| C4—C1—H1 | 113.3 (10) | C4A—C1A—H1AD | 111.5 (9) |
| C1—C2—H2 | 113.0 (11) | C1A—C2A—H2A | 112.3 (11) |
| C3—C2—C1 | 58.57 (11) | C3A—C2A—C1A | 58.51 (11) |
| C3—C2—H2 | 116.3 (11) | C3A—C2A—H2A | 116.0 (11) |
| C6—C2—C1 | 121.77 (14) | C6A—C2A—C1A | 122.11 (13) |
| C6—C2—C3 | 119.62 (14) | C6A—C2A—C3A | 119.45 (14) |
| C6—C2—H2 | 115.7 (11) | C6A—C2A—H2A | 116.1 (11) |
| C1—C3—C2 | 61.40 (11) | C1A—C3A—C2A | 60.89 (12) |
| C1—C3—H3A | 120.3 (11) | C1A—C3A—H3AA | 116.1 (9) |
| C1—C3—H3B | 115.1 (10) | C1A—C3A—H3AB | 117.8 (10) |
| C2—C3—H3A | 116.6 (12) | C2A—C3A—H3AA | 113.7 (12) |
| C2—C3—H3B | 118.6 (12) | C2A—C3A—H3AB | 115.9 (11) |
| H3A—C3—H3B | 114.6 (15) | H3AA—C3A—H3AB | 119.0 (14) |
| N1—C4—C1 | 110.69 (13) | N1A—C4A—C1A | 109.69 (13) |
| N1—C4—C5 | 109.68 (13) | N1A—C4A—C5A | 109.39 (13) |
| N1—C4—H4A | 108.6 (10) | N1A—C4A—H4AB | 106.7 (11) |
| C1—C4—C5 | 106.36 (14) | C1A—C4A—C5A | 106.73 (14) |
| C1—C4—H4A | 112.3 (10) | C1A—C4A—H4AB | 111.6 (11) |
| C5—C4—H4A | 109.2 (12) | C5A—C4A—H4AB | 112.7 (13) |
| O1—C5—C4 | 115.33 (14) | O1A—C5A—C4A | 114.98 (14) |
| O2—C5—O1 | 126.49 (17) | O2A—C5A—O1A | 126.36 (17) |
| O2—C5—C4 | 117.97 (14) | O2A—C5A—C4A | 118.46 (14) |
| O3—C6—O4 | 122.97 (16) | O3A—C6A—O4A | 122.89 (16) |
| O3—C6—C2 | 124.64 (16) | O3A—C6A—C2A | 124.66 (17) |
| O4—C6—C2 | 112.39 (14) | O4A—C6A—C2A | 112.45 (14) |
| H1WA—O1W—H1WB | 99 (2) | H1WC—O1WA—H1WD | 107 (3) |
| N1—C4—C5—O1 | −157.34 (12) | N1A—C4A—C5A—O1A | 159.17 (12) |
| N1—C4—C5—O2 | 27.53 (18) | N1A—C4A—C5A—O2A | −25.74 (18) |
| C1—C2—C6—O3 | 31.9 (2) | C1A—C2A—C6A—O3A | −30.4 (2) |
| C1—C2—C6—O4 | −148.40 (15) | C1A—C2A—C6A—O4A | 150.15 (14) |
| C1—C4—C5—O1 | 82.93 (15) | C1A—C4A—C5A—O1A | −82.23 (15) |
| C1—C4—C5—O2 | −92.20 (16) | C1A—C4A—C5A—O2A | 92.87 (16) |
| C2—C1—C4—N1 | 83.47 (18) | C2A—C1A—C4A—N1A | −85.57 (18) |
| C2—C1—C4—C5 | −157.45 (15) | C2A—C1A—C4A—C5A | 156.02 (14) |
| C3—C1—C2—C6 | −107.63 (17) | C3A—C1A—C2A—C6A | 107.23 (16) |
| C3—C1—C4—N1 | 156.11 (16) | C3A—C1A—C4A—N1A | −159.79 (16) |
| C3—C1—C4—C5 | −84.81 (19) | C3A—C1A—C4A—C5A | 81.8 (2) |
| C3—C2—C6—O3 | −37.4 (2) | C3A—C2A—C6A—O3A | 38.8 (2) |
| C3—C2—C6—O4 | 142.30 (14) | C3A—C2A—C6A—O4A | −140.58 (14) |
| C4—C1—C2—C3 | 108.16 (17) | C4A—C1A—C2A—C3A | −109.43 (17) |
| C4—C1—C2—C6 | 0.5 (2) | C4A—C1A—C2A—C6A | −2.2 (2) |
| C4—C1—C3—C2 | −115.01 (18) | C4A—C1A—C3A—C2A | 115.80 (19) |
| C6—C2—C3—C1 | 111.25 (16) | C6A—C2A—C3A—C1A | −111.72 (16) |
| H··· | ||||
| N1—H1 | 0.94 (2) | 2.03 (2) | 2.9444 (18) | 162.1 (17) |
| N1—H1 | 0.86 (2) | 2.39 (2) | 2.9454 (18) | 123.1 (16) |
| N1—H1 | 0.98 (3) | 1.83 (3) | 2.795 (2) | 167 (2) |
| O4—H4···O1iii | 0.81 (3) | 1.79 (3) | 2.5851 (18) | 166 (3) |
| O1 | 0.82 (3) | 2.01 (3) | 2.8072 (19) | 166 (2) |
| O1 | 0.86 (2) | 1.90 (2) | 2.7449 (16) | 169 (2) |
| N1 | 0.90 (2) | 2.01 (2) | 2.9087 (18) | 173 (2) |
| N1 | 0.87 (2) | 2.38 (2) | 3.1151 (19) | 141.7 (17) |
| N1 | 0.93 (2) | 1.87 (2) | 2.785 (2) | 165.6 (18) |
| O4 | 0.98 (3) | 1.60 (3) | 2.5672 (16) | 168 (2) |
| O1 | 0.83 (3) | 2.07 (3) | 2.8628 (19) | 158 (2) |
| O1 | 0.81 (2) | 1.98 (3) | 2.7717 (17) | 166 (3) |