Literature DB >> 26274449

Origin of Enthalpic Depletion Forces.

Liel Sapir1, Daniel Harries1.   

Abstract

Solutes excluded from macromolecules or colloids are known to drive depletion attractions. The established Asakura-Oosawa model, as well as subsequent theories aimed at explaining the effects of macromolecular crowding, attribute depletion forces to diminished hard-core excluded volume upon compaction, and hence predict depletion forces dominated by entropy. However, recent experiments measuring the effect of preferentially excluded solutes on protein folding and macromolecular association find these forces can also be enthalpic. We use simulations of macromolecular association in explicit binary cosolute-solvent mixtures, with solvent and cosolute intermolecular interactions that go beyond hard-cores, to show that not all cosolutes conform to the established entropically dominated model. We further demonstrate how the enthalpically dominated depletion forces that we find can be well described within an Asakura-Oosawa like model provided that the hard-core macromolecule-cosolute potential of mean force is augmented by a "soft" step-like repulsion.

Keywords:  colloids; depletion attraction; effective forces; excluded cosolutes; macromolecular crowding; osmolytes

Year:  2014        PMID: 26274449     DOI: 10.1021/jz5002715

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  16 in total

1.  Crowding-Induced Elongated Conformation of Urea-Unfolded Apoazurin: Investigating the Role of Crowder Shape in Silico.

Authors:  Fabio C Zegarra; Dirar Homouz; Andrei G Gasic; Lucas Babel; Michael Kovermann; Pernilla Wittung-Stafshede; Margaret S Cheung
Journal:  J Phys Chem B       Date:  2019-04-23       Impact factor: 2.991

2.  Effects of hydrophobic macromolecular crowders on amyloid β (16-22) aggregation.

Authors:  David C Latshaw; Carol K Hall
Journal:  Biophys J       Date:  2015-07-07       Impact factor: 4.033

3.  Analysis of the size dependence of macromolecular crowding shows that smaller is better.

Authors:  Kim A Sharp
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-15       Impact factor: 11.205

4.  Interactions of a Polypeptide with a Protein Nanopore Under Crowding Conditions.

Authors:  Motahareh Ghahari Larimi; Lauren Ashley Mayse; Liviu Movileanu
Journal:  ACS Nano       Date:  2019-04-03       Impact factor: 15.881

5.  Structural Basis of Enhanced Facilitated Diffusion of DNA-Binding Protein in Crowded Cellular Milieu.

Authors:  Pinki Dey; Arnab Bhattacherjee
Journal:  Biophys J       Date:  2019-11-29       Impact factor: 4.033

6.  Separating chemical and excluded volume interactions of polyethylene glycols with native proteins: Comparison with PEG effects on DNA helix formation.

Authors:  Irina A Shkel; D B Knowles; M Thomas Record
Journal:  Biopolymers       Date:  2015-09       Impact factor: 2.505

7.  Cosolutes, Crowding, and Protein Folding Kinetics.

Authors:  Annelise H Gorensek-Benitez; Austin E Smith; Samantha S Stadmiller; Gerardo M Perez Goncalves; Gary J Pielak
Journal:  J Phys Chem B       Date:  2017-06-29       Impact factor: 2.991

Review 8.  Macromolecular Crowding In Vitro, In Vivo, and In Between.

Authors:  Germán Rivas; Allen P Minton
Journal:  Trends Biochem Sci       Date:  2016-09-23       Impact factor: 13.807

9.  Effective potentials induced by self-assembly of patchy particles.

Authors:  Nicolás Ariel García; Nicoletta Gnan; Emanuela Zaccarelli
Journal:  Soft Matter       Date:  2017-09-20       Impact factor: 3.679

Review 10.  Biomolecular interactions of ultrasmall metallic nanoparticles and nanoclusters.

Authors:  Alioscka A Sousa; Peter Schuck; Sergio A Hassan
Journal:  Nanoscale Adv       Date:  2021-04-28
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