Literature DB >> 26273876

Fast Computation of Solvation Free Energies with Molecular Density Functional Theory: Thermodynamic-Ensemble Partial Molar Volume Corrections.

Volodymyr P Sergiievskyi1, Guillaume Jeanmairet1, Maximilien Levesque1, Daniel Borgis1,2.   

Abstract

Molecular density functional theory (MDFT) offers an efficient implicit-solvent method to estimate molecule solvation free-energies, whereas conserving a fully molecular representation of the solvent. Even within a second-order approximation for the free-energy functional, the so-called homogeneous reference fluid approximation, we show that the hydration free-energies computed for a data set of 500 organic compounds are of similar quality as those obtained from molecular dynamics free-energy perturbation simulations, with a computer cost reduced by 2-3 orders of magnitude. This requires to introduce the proper partial volume correction to transform the results from the grand canonical to the isobaric-isotherm ensemble that is pertinent to experiments. We show that this correction can be extended to 3D-RISM calculations, giving a sound theoretical justification to empirical partial molar volume corrections that have been proposed recently.

Keywords:  3D-RISM; classical density functional theory; implicit solvent method; integral equations; solvation free energy; water

Year:  2014        PMID: 26273876     DOI: 10.1021/jz500428s

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  2 in total

1.  Small molecule hydration energy and entropy from 3D-RISM.

Authors:  J Johnson; D A Case; T Yamazaki; S Gusarov; A Kovalenko; T Luchko
Journal:  J Phys Condens Matter       Date:  2016-07-01       Impact factor: 2.333

2.  Implementation and Optimization of the Embedded Cluster Reference Interaction Site Model with Atomic Charges.

Authors:  Ádám Ganyecz; Mihály Kállay
Journal:  J Phys Chem A       Date:  2022-04-08       Impact factor: 2.944

  2 in total

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