| Literature DB >> 26273455 |
Osamu Usami1, Chie Nakajima2, Shiro Endo3, Shinya Inomata3, Hajime Kanamori4, Yoichi Hirakata4, Bine Uchiyama4, Mitsuo Kaku5, Yasuhiko Suzuki2, Toshio Hattori6.
Abstract
A 76-year-old Japanese woman contracted a Mycobacterium tuberculosis (TB, Manila type) infection in Japan, despite never having traveled. However, her son was treated for TB in the Philippines 3 years before he stayed at her house. Spoligotyping allows us to identify the TB genotype and identify the route of infection.Entities:
Keywords: Japan; Manila; Mycobacterium tuberculosis; Spoligo-International-Type; spoligotyping
Year: 2015 PMID: 26273455 PMCID: PMC4527809 DOI: 10.1002/ccr3.277
Source DB: PubMed Journal: Clin Case Rep ISSN: 2050-0904
Figure 1Chest computed tomography findings reveal consolidation in both lungs, without cavities, at admission.
Comparison of the spoligotype pattern of the current sample with the Beijing type
| Sample (ID) | Spoligotype pattern | SIT | Label |
|---|---|---|---|
| Current sample (kit-3) | ■ ■ □ ■ ■ ■ ■ ■ ■ ■ ■ ■ ■ ■ ■ ■ ■ ■ ■ □ □ ■ ■ ■ ■ ■ ■ ■ □ □ □ □ ■ □ ■ ■ ■ ■ ■ ■ ■ ■ ■ | 19 | EAI2_Manilla |
| Typical Beijing type | □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ □ ■ ■ ■ ■ ■ ■ ■ ■ ■ | 1 | Beijing |
The majority of Japanese M. tuberculosis isolates belong to the Beijing genotype (Spoligo International Type [SIT] number 1).
Squares indicate spacers 1 to 43 in the spoligotyping. A closed square indicates a positive spacer, while an open square indicates a negative spacer.
SIT number and label were determined using the SpolDB4 database (Reference 8).