| Literature DB >> 26273408 |
Wei Zhao1, Yan Wang1, Ying Wang2, Nan Gao1, Zhifeng Han1, Haixiang Yu1.
Abstract
BACKGROUND: To explore the molecular mechanisms of the anti-cancer effect of curcumin in human lung squamous cell carcinoma (LSQCC) SK-MES-1 cells.Entities:
Keywords: Curcumin; RNA-sequencing; enrichment analysis; lung squamous cell carcinoma; protein-protein interaction
Year: 2015 PMID: 26273408 PMCID: PMC4511331 DOI: 10.1111/1759-7714.12222
Source DB: PubMed Journal: Thorac Cancer ISSN: 1759-7706 Impact factor: 3.500
Figure 1Effect of curcumin on cell viability. SK-MES-1 cells were treated with different concentrations of curcumin for 48 hours. Proliferation rates were calculated as [(ODtreated/ODcontrol) × 100%]. Experiments were performed six times. Values represent mean (± standard deviation) cell viability as a percentage of untreated control samples. Con, control.
Figure 2The scatterplot of gene expression levels in human squamous cell lung carcinoma SK-MES-1 cells with and without curcumin treatment. The red represents upregulated genes in SK-MES-1 cells with curcumin treatment compared with the cells without curcumin treatment; green represents downregulated genes in the treatment groups; blue represents the genes that were not significantly differentially expressed. The X-axis represents the control groups and the Y-axis represents the treatment groups.
The significantly enriched Kyoto Encyclopedia of Genes and Genomes pathways of differentially expressed genes in the treatment groups compared with the control groups
| Term | Count | Genes | |
|---|---|---|---|
| Upregulated genes | |||
| hsa03410:Base excision repair | 4 | 3.48E-03 | |
| hsa04630:Jak-STAT signaling pathway | 5 | 4.70E-02 | |
| Downregulated genes | |||
| hsa04150:mTOR signaling pathway | 5 | 2.19E-04 | |
| hsa04370:VEGF signaling pathway | 5 | 8.95E-04 | |
| hsa05412:Arrhythmogenic right ventricular cardiomyopathy (ARVC) | 4 | 9.75E-03 | |
| hsa05410:Hypertrophic cardiomyopathy (HCM) | 4 | 1.32E-02 | |
| hsa04010:MAPK signaling pathway | 6 | 1.86E-02 | |
| hsa04660:T cell receptor signaling pathway | 4 | 2.50E-02 | |
| hsa04722:Neurotrophin signaling pathway | 4 | 3.56E-02 | |
| hsa05200:Pathways in cancer | 6 | 4.07E-02 | |
| hsa05221:Acute myeloid leukemia | 3 | 4.54E-02 |
Count, the number of genes enriched on the term.
AKT1, v-akt murine thymoma viral oncogene homolog 1 (ID: 207)
ARRB2, arrestin, beta 2 (ID: 409)
CACNG6, calcium channel, voltage-dependent, gamma subunit 6 (ID: 59285)
CLCF1, cardiotrophin-like cytokine factor 1 (ID: 23529)
DAG1, dystroglycan 1 (ID: 1605)
DMD, dystrophin, muscular dystrophy (ID: 1756)
HIF1A, hypoxia inducible factor 1, alpha subunit (ID: 3091)
IL15RA, interleukin 15 receptor, alpha chain (ID: 3601)
MAPK1, mitogen-activated protein kinase 1 (ID: 5594)
MAPK14, mitogen-activated protein kinase 14 (ID: 1432)
MLST8, MTOR associated protein, LST8 homolog (ID: 64223)
MUTYH, mutY homolog (ID: 4595)
NFKB1, nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (ID: 4790)
PARP3, poly (ADP-ribose) polymerase family, member 3 (ID: 10039)
PCNA, proliferating cell nuclear antigen (ID: 5111)
POLL, polymerase (DNA directed), lambda (ID: 27343)
PRKAA1, protein kinase, AMP-activated, alpha 1 catalytic subunit (ID: 5562)
PTK2, protein tyrosine kinase 2 (ID: 5747)
PPP3CC, protein phosphatase 3, catalytic subunit, gamma isozyme (ID: 5533)
STAT2, signal transducer and activator of transcription 2, 113 kDa (ID: 6773)
STAT5A, signal transducer and activator of transcription 5A (ID: 6776)
SH2B1, SH2B adaptor protein 1 (ID: 25970)
TCF7L2, transcription factor 7-like 2 (ID: 6934)
VEGFA, vascular endothelial growth factor A (ID: 7422).
The top 10 significantly enriched biological processes of Gene Ontology of upregulated genes in the treatment groups compared with the control groups
| Term | Count | Genes | |
|---|---|---|---|
| GO:0032870∼cellular response to hormone stimulus | 7 | 7.49E-04 | |
| GO:0002520∼immune system development | 9 | 1.85E-03 | |
| GO:0043066∼negative regulation of apoptosis | 10 | 2.37E-03 | |
| GO:0030334∼regulation of cell migration | 7 | 2.55E-03 | |
| GO:0043069∼negative regulation of programmed cell death | 10 | 2.60E-03 | |
| GO:0060548∼negative regulation of cell death | 10 | 2.65E-03 | |
| GO:0030097∼hemopoiesis | 8 | 3.13E-03 | |
| GO:0040012∼regulation of locomotion | 7 | 4.78E-03 | |
| GO:0051270∼regulation of cell motion | 7 | 4.90E-03 | |
| GO:0048534∼hemopoietic or lymphoid organ development | 8 | 5.30E-03 |
Count, the number of genes enriched in the term.
AKT1, v-akt murine thymoma viral oncogene homolog 1 (ID: 207)
ASH2L, ash2 (absent, small, or homeotic)-like (Drosophila) (ID: 9070)
BARD1, BRCA1 associated RING domain 1 (ID: 580)
CASP8, caspase 8, apoptosis-related cysteine peptidase (ID:841)
CDH13, cadherin 13 (ID: 1012)
CLCF1, cardiotrophin-like cytokine factor 1 (ID: 23529)
DHRS2, dehydrogenase/reductase (SDR family) member 2 (ID: 10202)
ERCC1, excision repair cross-complementation group 1 (ID: 2067)
GNAS, GNAS complex locus (ID: 2778)
GO, gene ontology
HDAC5, histone deacetylase 5 (ID: 10014)
ITGA2, integrin, alpha 2 (ID: 3673)
LAMA4, laminin, alpha 4 (ID: 3910)
NF2, neurofibromin 2 (ID: 4771)
NUP62, nucleoporin 62 kDa (ID: 23636)
POLL, polymerase (DNA directed), lambda (ID: 27343)
PRNP, prion protein (ID: 5621)
SERPINE2, serpin peptidase inhibitor, clade E, member 2 (ID: 5270)
SOD2, superoxide dismutase 2 (ID: 6648)
STAT5A, signal transducer and activator of transcription 5A (ID: 6776)
THRA, thyroid hormone receptor alpha (ID: 7067).
The top 10 significantly enriched biological processes of Gene Ontology of downregulated genes in the treatment groups compared with the control groups
| Term | Count | Genes | |
|---|---|---|---|
| GO:0010604∼positive regulation of macromolecule metabolic process | 14 | 1.64E-03 | |
| GO:0045944∼positive regulation of transcription from RNA polymerase II promoter | 9 | 1.67E-03 | |
| GO:0045941∼positive regulation of transcription | 11 | 1.92E-03 | |
| GO:0030218∼erythrocyte differentiation | 4 | 2.15E-03 | |
| GO:0010628∼positive regulation of gene expression | 11 | 2.38E-03 | |
| GO:0009891∼positive regulation of biosynthetic process | 12 | 2.77E-03 | |
| GO:0034101∼erythrocyte homeostasis | 4 | 3.12E-03 | |
| GO:0045935∼positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 11 | 3.97E-03 | |
| GO:0051173∼positive regulation of nitrogen compound metabolic process | 11 | 4.96E-03 | |
| GO:0010557∼positive regulation of macromolecule biosynthetic process | 11 | 5.52E-03 |
Count, the number of genes enriched in the term.
ADD1, adducin 1 (alpha) (ID: 118)
CDK1, cyclin-dependent kinase 1 (ID: 983)
ETV4, ets variant 4 (ID: 2118)
GO, gene ontology
HIF1A, hypoxia inducible factor 1, alpha subunit (ID: 3091)
MAEA, macrophage erythroblast attacher (ID: 10296)
MAPK1, mitogen-activated protein kinase 1 (ID: 5594)
MAPK14, mitogen-activated protein kinase 14 (ID: 1432)
MLST8, MTOR associated protein, LST8 homolog (ID: 64223)
MORF4L2, mortality factor 4 like 2 (ID: 9643)
NFKB1, nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (ID: 4790)
PRKAA1, protein kinase, AMP-activated, alpha 1 catalytic subunit (ID: 5562)
SP1, Sp1 transcription factor (ID: 6667)
SMURF1, SMAD specific E3 ubiquitin protein ligase 1 (ID: 57154)
STAT6, signal transducer and activator of transcription 6, interleukin-4 induced (ID: 6778)
TCF7L2, transcription factor 7-like 2 (ID: 6934)
TEAD2, TEA domain family member 2 (ID: 8463)
VEGFA, vascular endothelial growth factor A (ID: 7422).
Figure 3The protein-protein interaction network of upregulated genes in the treatment groups compared with the control groups.
Figure 4The protein-protein interaction network of downregulated genes in the treatment groups compared with the control groups.