Literature DB >> 26272247

Flavivirus RNA synthesis in vitro.

Radhakrishnan Padmanabhan1, Ratree Takhampunya2, Tadahisa Teramoto2, Kyung H Choi3.   

Abstract

Establishment of in vitro systems to study mechanisms of RNA synthesis for positive strand RNA viruses have been very useful in the past and have shed light on the composition of protein and RNA components, optimum conditions, the nature of the products formed, cis-acting RNA elements and trans-acting protein factors required for efficient synthesis. In this review, we summarize our current understanding regarding the requirements for flavivirus RNA synthesis in vitro. We describe details of reaction conditions, the specificity of template used by either the multi-component membrane-bound viral replicase complex or by purified, recombinant RNA-dependent RNA polymerase. We also discuss future perspectives to extend the boundaries of our knowledge.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Cytoplasmic membrane-bound viral replication complex; Endogenous and exogenous viral RNA templates; Heparin trap; Polarity of RNA product by RNase H mapping; RNA-dependent RNA polymerase from positive strand mosquito-borne Flaviviridae; Temperature-dependent de novo initiation and elongation

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Year:  2015        PMID: 26272247      PMCID: PMC4712636          DOI: 10.1016/j.ymeth.2015.08.002

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  121 in total

1.  Markers for trans-Golgi membranes and the intermediate compartment localize to induced membranes with distinct replication functions in flavivirus-infected cells.

Authors:  J M Mackenzie; M K Jones; E G Westaway
Journal:  J Virol       Date:  1999-11       Impact factor: 5.103

2.  Architecture of the flaviviral replication complex. Protease, nuclease, and detergents reveal encasement within double-layered membrane compartments.

Authors:  Pradeep Devappa Uchil; Vijaya Satchidanandam
Journal:  J Biol Chem       Date:  2003-04-16       Impact factor: 5.157

3.  RNA sequences and structures required for the recruitment and activity of the dengue virus polymerase.

Authors:  Claudia V Filomatori; Nestor G Iglesias; Sergio M Villordo; Diego E Alvarez; Andrea V Gamarnik
Journal:  J Biol Chem       Date:  2010-12-23       Impact factor: 5.157

4.  Detection of a trypsin-like serine protease domain in flaviviruses and pestiviruses.

Authors:  J F Bazan; R J Fletterick
Journal:  Virology       Date:  1989-08       Impact factor: 3.616

5.  Involvement of the host cell nuclear envelope membranes in the replication of Japanese encephalitis virus.

Authors:  E Zebovitz; J K Leong; S C Doughty
Journal:  Infect Immun       Date:  1974-07       Impact factor: 3.441

6.  Recombinant dengue type 1 virus NS5 protein expressed in Escherichia coli exhibits RNA-dependent RNA polymerase activity.

Authors:  B H Tan; J Fu; R J Sugrue; E H Yap; Y C Chan; Y H Tan
Journal:  Virology       Date:  1996-02-15       Impact factor: 3.616

7.  Inhibition of dengue virus polymerase by blocking of the RNA tunnel.

Authors:  Pornwaratt Niyomrattanakit; Yen-Liang Chen; Hongping Dong; Zheng Yin; Min Qing; J Frasier Glickman; Kai Lin; Dieter Mueller; Hans Voshol; Joanne Y H Lim; Shahul Nilar; Thomas H Keller; Pei-Yong Shi
Journal:  J Virol       Date:  2010-03-17       Impact factor: 5.103

8.  The serine protease and RNA-stimulated nucleoside triphosphatase and RNA helicase functional domains of dengue virus type 2 NS3 converge within a region of 20 amino acids.

Authors:  H Li; S Clum; S You; K E Ebner; R Padmanabhan
Journal:  J Virol       Date:  1999-04       Impact factor: 5.103

9.  Expression, purification, and characterization of the RNA 5'-triphosphatase activity of dengue virus type 2 nonstructural protein 3.

Authors:  Greg Bartelma; R Padmanabhan
Journal:  Virology       Date:  2002-07-20       Impact factor: 3.616

10.  Initiation of minus-strand RNA synthesis by the brome mosaicvirus RNA-dependent RNA polymerase: use of oligoribonucleotide primers.

Authors:  C C Kao; J H Sun
Journal:  J Virol       Date:  1996-10       Impact factor: 5.103

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  4 in total

1.  Serotype-specific interactions among functional domains of dengue virus 2 nonstructural proteins (NS) 5 and NS3 are crucial for viral RNA replication.

Authors:  Tadahisa Teramoto; Anuradha Balasubramanian; Kyung H Choi; Radhakrishnan Padmanabhan
Journal:  J Biol Chem       Date:  2017-04-10       Impact factor: 5.157

2.  Flavivirus enzymes and their inhibitors.

Authors:  Ekaterina Knyazhanskaya; Marc C Morais; Kyung H Choi
Journal:  Enzymes       Date:  2021-09-01

Review 3.  RNA Dependent RNA Polymerases: Insights from Structure, Function and Evolution.

Authors:  Sangita Venkataraman; Burra V L S Prasad; Ramasamy Selvarajan
Journal:  Viruses       Date:  2018-02-10       Impact factor: 5.048

Review 4.  The Role of the Stem-Loop A RNA Promoter in Flavivirus Replication.

Authors:  Kyung H Choi
Journal:  Viruses       Date:  2021-06-09       Impact factor: 5.048

  4 in total

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