Literature DB >> 26271459

A Guide for a Cardiovascular Genomics Biorepository: the CATHGEN Experience.

William E Kraus1,2, Christopher B Granger3,4, Michael H Sketch3, Mark P Donahue3, Geoffrey S Ginsburg5, Elizabeth R Hauser3,6, Carol Haynes6, L Kristin Newby3,4, Melissa Hurdle6, Z Elaine Dowdy6, Svati H Shah3,6.   

Abstract

The CATHeterization GENetics (CATHGEN) biorepository was assembled in four phases. First, project start-up began in 2000. Second, between 2001 and 2010, we collected clinical data and biological samples from 9334 individuals undergoing cardiac catheterization. Samples were matched at the individual level to clinical data collected at the time of catheterization and stored in the Duke Databank for Cardiovascular Diseases (DDCD). Clinical data included the following: subject demographics (birth date, race, gender, etc.); cardiometabolic history including symptoms; coronary anatomy and cardiac function at catheterization; and fasting chemistry data. Third, as part of the DDCD regular follow-up protocol, yearly evaluations included interim information: vital status (verified via National Death Index search and supplemented by Social Security Death Index search), myocardial infarction (MI), stroke, rehospitalization, coronary revascularization procedures, medication use, and lifestyle habits including smoking. Fourth, samples were used to generate molecular data. CATHGEN offers the opportunity to discover biomarkers and explore mechanisms of cardiovascular disease.

Entities:  

Keywords:  Air pollution; Biomarkers; Biorepository; Cardiometabolic disease; Cardiovascular disease; Genetics; Genomics; Geocoding; Metabolomics

Mesh:

Substances:

Year:  2015        PMID: 26271459      PMCID: PMC4651812          DOI: 10.1007/s12265-015-9648-y

Source DB:  PubMed          Journal:  J Cardiovasc Transl Res        ISSN: 1937-5387            Impact factor:   4.132


  42 in total

1.  Multicenter validation of the diagnostic accuracy of a blood-based gene expression test for assessing obstructive coronary artery disease in nondiabetic patients.

Authors:  Steven Rosenberg; Michael R Elashoff; Philip Beineke; Susan E Daniels; James A Wingrove; Whittemore G Tingley; Philip T Sager; Amy J Sehnert; May Yau; William E Kraus; L Kristin Newby; Robert S Schwartz; Szilard Voros; Stephen G Ellis; Naeem Tahirkheli; Ron Waksman; John McPherson; Alexandra Lansky; Mary E Winn; Nicholas J Schork; Eric J Topol
Journal:  Ann Intern Med       Date:  2010-10-05       Impact factor: 25.391

Review 2.  Lipoprotein particle analysis by nuclear magnetic resonance spectroscopy.

Authors:  Elias J Jeyarajah; William C Cromwell; James D Otvos
Journal:  Clin Lab Med       Date:  2006-12       Impact factor: 1.935

3.  The Measurement to Understand Reclassification of Disease of Cabarrus/Kannapolis (MURDOCK) Study Community Registry and Biorepository.

Authors:  Sayanti Bhattacharya; Ashley A Dunham; Melissa A Cornish; Victoria A Christian; Geoffrey S Ginsburg; Jessica D Tenenbaum; Meredith L Nahm; Marie Lynn Miranda; Robert M Califf; Rowena J Dolor; L Kristin Newby
Journal:  Am J Transl Res       Date:  2012-10-10       Impact factor: 4.060

4.  Red cell distribution width, C-reactive protein, the complete blood count, and mortality in patients with coronary disease and a normal comparison population.

Authors:  Jason M Lappé; Benjamin D Horne; Svati H Shah; Heidi T May; Joseph B Muhlestein; Donald L Lappé; Abdallah G Kfoury; John F Carlquist; Deborah Budge; Rami Alharethi; Tami L Bair; William E Kraus; Jeffrey L Anderson
Journal:  Clin Chim Acta       Date:  2011-07-27       Impact factor: 3.786

5.  Polymorphic variants in tenascin-C (TNC) are associated with atherosclerosis and coronary artery disease.

Authors:  Mollie A Minear; David R Crosslin; Beth S Sutton; Jessica J Connelly; Sarah C Nelson; Shera Gadson-Watson; Tianyuan Wang; David Seo; Jeffrey M Vance; Michael H Sketch; Carol Haynes; Pascal J Goldschmidt-Clermont; Svati H Shah; William E Kraus; Elizabeth R Hauser; Simon G Gregory
Journal:  Hum Genet       Date:  2011-02-05       Impact factor: 4.132

6.  Polymorphisms of the tumor suppressor gene LSAMP are associated with left main coronary artery disease.

Authors:  L Wang; E R Hauser; S H Shah; D Seo; P Sivashanmugam; S T Exum; S G Gregory; C B Granger; J L Haines; C J H Jones; D Crossman; C Haynes; W E Kraus; N J Freedman; M A Pericak-Vance; P J Goldschmidt-Clermont; J M Vance
Journal:  Ann Hum Genet       Date:  2008-07-03       Impact factor: 1.670

7.  Improving population representation through geographic health information systems: mapping the MURDOCK study.

Authors:  Ben W Strauss; Ellis M Valentiner; Sayanti Bhattacharya; Michelle M Smerek; Ashley A Dunham; L Kristin Newby; Marie Lynn Miranda
Journal:  Am J Transl Res       Date:  2014-07-18       Impact factor: 4.060

8.  Development of a blood-based gene expression algorithm for assessment of obstructive coronary artery disease in non-diabetic patients.

Authors:  Michael R Elashoff; James A Wingrove; Philip Beineke; Susan E Daniels; Whittemore G Tingley; Steven Rosenberg; Szilard Voros; William E Kraus; Geoffrey S Ginsburg; Robert S Schwartz; Stephen G Ellis; Naheem Tahirkheli; Ron Waksman; John McPherson; Alexandra J Lansky; Eric J Topol
Journal:  BMC Med Genomics       Date:  2011-03-28       Impact factor: 3.063

9.  GATA2 is associated with familial early-onset coronary artery disease.

Authors:  Jessica J Connelly; Tianyuan Wang; Julie E Cox; Carol Haynes; Liyong Wang; Svati H Shah; David R Crosslin; A Brent Hale; Sarah Nelson; David C Crossman; Christopher B Granger; Jonathan L Haines; Christopher J H Jones; Jeffery M Vance; Pascal J Goldschmidt-Clermont; William E Kraus; Elizabeth R Hauser; Simon G Gregory
Journal:  PLoS Genet       Date:  2006-07-20       Impact factor: 5.917

10.  Association of Roadway Proximity with Fasting Plasma Glucose and Metabolic Risk Factors for Cardiovascular Disease in a Cross-Sectional Study of Cardiac Catheterization Patients.

Authors:  Cavin K Ward-Caviness; William E Kraus; Colette Blach; Carol S Haynes; Elaine Dowdy; Marie Lynn Miranda; Robert B Devlin; David Diaz-Sanchez; Wayne E Cascio; Shaibal Mukerjee; Casson Stallings; Luther A Smith; Simon G Gregory; Svati H Shah; Elizabeth R Hauser; Lucas M Neas
Journal:  Environ Health Perspect       Date:  2015-03-24       Impact factor: 9.031

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  38 in total

1.  Preliminary evidence of effects of potassium chloride on a metabolomic path to diabetes and cardiovascular disease.

Authors:  Ranee Chatterjee; Clemontina A Davenport; Lydia Kwee; David D'Alessio; Laura P Svetkey; Pao-Hwa Lin; Cris A Slentz; Olga Ilkayeva; Johanna Johnson; David Edelman; Svati H Shah
Journal:  Metabolomics       Date:  2020-06-18       Impact factor: 4.290

2.  Apolipoprotein L1 Genetic Variants Are Associated with Chronic Kidney Disease but Not with Cardiovascular Disease in a Population Referred for Cardiac Catheterization.

Authors:  Hanghang Wang; Patrick H Pun; Lydia Kwee; Damian Craig; Carol Haynes; Megan Chryst-Ladd; Laura P Svetkey; Uptal D Patel; Elizabeth R Hauser; Martin R Pollak; William E Kraus; Svati H Shah
Journal:  Cardiorenal Med       Date:  2016-12-29       Impact factor: 2.041

3.  Evaluation of PM2.5 air pollution sources and cardiovascular health.

Authors:  Erik Slawsky; Cavin K Ward-Caviness; Lucas Neas; Robert B Devlin; Wayne E Cascio; Armistead G Russell; Ran Huang; William E Kraus; Elizabeth Hauser; David Diaz-Sanchez; Anne M Weaver
Journal:  Environ Epidemiol       Date:  2021-05-20

4.  Genetic and Pharmacologic Inactivation of ANGPTL3 and Cardiovascular Disease.

Authors:  Frederick E Dewey; Viktoria Gusarova; Richard L Dunbar; Colm O'Dushlaine; Claudia Schurmann; Omri Gottesman; Shane McCarthy; Cristopher V Van Hout; Shannon Bruse; Hayes M Dansky; Joseph B Leader; Michael F Murray; Marylyn D Ritchie; H Lester Kirchner; Lukas Habegger; Alex Lopez; John Penn; An Zhao; Weiping Shao; Neil Stahl; Andrew J Murphy; Sara Hamon; Aurelie Bouzelmat; Rick Zhang; Brad Shumel; Robert Pordy; Daniel Gipe; Gary A Herman; Wayne H H Sheu; I-Te Lee; Kae-Woei Liang; Xiuqing Guo; Jerome I Rotter; Yii-Der I Chen; William E Kraus; Svati H Shah; Scott Damrauer; Aeron Small; Daniel J Rader; Anders Berg Wulff; Børge G Nordestgaard; Anne Tybjærg-Hansen; Anita M van den Hoek; Hans M G Princen; David H Ledbetter; David J Carey; John D Overton; Jeffrey G Reid; William J Sasiela; Poulabi Banerjee; Alan R Shuldiner; Ingrid B Borecki; Tanya M Teslovich; George D Yancopoulos; Scott J Mellis; Jesper Gromada; Aris Baras
Journal:  N Engl J Med       Date:  2017-05-24       Impact factor: 91.245

5.  Association of long-term PM2.5 exposure with traditional and novel lipid measures related to cardiovascular disease risk.

Authors:  Laura A McGuinn; Alexandra Schneider; Robert W McGarrah; Cavin Ward-Caviness; Lucas M Neas; Qian Di; Joel Schwartz; Elizabeth R Hauser; William E Kraus; Wayne E Cascio; David Diaz-Sanchez; Robert B Devlin
Journal:  Environ Int       Date:  2018-11-13       Impact factor: 9.621

6.  The missing indicator approach for censored covariates subject to limit of detection in logistic regression models.

Authors:  Sy Han Chiou; Rebecca A Betensky; Raji Balasubramanian
Journal:  Ann Epidemiol       Date:  2019-08-13       Impact factor: 3.797

7.  A novel approach for measuring residential socioeconomic factors associated with cardiovascular and metabolic health.

Authors:  Jaime E Mirowsky; Robert B Devlin; David Diaz-Sanchez; Wayne Cascio; Shannon C Grabich; Carol Haynes; Colette Blach; Elizabeth R Hauser; Svati Shah; William Kraus; Kenneth Olden; Lucas Neas
Journal:  J Expo Sci Environ Epidemiol       Date:  2016-09-21       Impact factor: 5.563

8.  A Novel Protein Glycan-Derived Inflammation Biomarker Independently Predicts Cardiovascular Disease and Modifies the Association of HDL Subclasses with Mortality.

Authors:  Robert W McGarrah; Jacob P Kelly; Damian M Craig; Carol Haynes; Ryan C Jessee; Kim M Huffman; William E Kraus; Svati H Shah
Journal:  Clin Chem       Date:  2016-11-03       Impact factor: 8.327

9.  The two-pore domain potassium channel TREK-1 mediates cardiac fibrosis and diastolic dysfunction.

Authors:  Dennis M Abraham; Teresa E Lee; Lewis J Watson; Lan Mao; Gurangad Chandok; Hong-Gang Wang; Stephan Frangakis; Geoffrey S Pitt; Svati H Shah; Matthew J Wolf; Howard A Rockman
Journal:  J Clin Invest       Date:  2018-10-02       Impact factor: 14.808

10.  Association between satellite-based estimates of long-term PM2.5 exposure and coronary artery disease.

Authors:  Laura A McGuinn; Cavin K Ward-Caviness; Lucas M Neas; Alexandra Schneider; David Diaz-Sanchez; Wayne E Cascio; William E Kraus; Elizabeth Hauser; Elaine Dowdy; Carol Haynes; Alexandra Chudnovsky; Petros Koutrakis; Robert B Devlin
Journal:  Environ Res       Date:  2015-11-21       Impact factor: 6.498

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