Literature DB >> 26270169

Using SOAPaligner for Short Reads Alignment.

Shengchang Gu1, Lin Fang1, Xun Xu1.   

Abstract

This unit shows how to use the SOAPaligner package to align short reads to reference. The use of the two most common versions of SOAPaligner, SOAP2 and SOAP3-dp, will be described in detail. The unit also includes a protocol for SNP calling from SOAP2 alignment with SOAPsnp.
Copyright © 2013 John Wiley & Sons, Inc.

Entities:  

Keywords:  GPU; SNP calling; SOAP; consensus; index; mapping

Mesh：

Year:  2013        PMID： 26270169     DOI： 10.1002/0471250953.bi1111s44

Source DB:  PubMed          Journal:  Curr Protoc Bioinformatics        ISSN： 1934-3396


  23 in total

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