Literature DB >> 26263456

Femto- to Microsecond Photodynamics of an Unusual Bacteriophytochrome.

Tilo Mathes1, Janneke Ravensbergen1, Miroslav Kloz1, Tobias Gleichmann1, Kevin D Gallagher2, Nicole C Woitowich2, Rachael St Peter2, Svetlana E Kovaleva2, Emina A Stojković2, John T M Kennis1.   

Abstract

A bacteriophytochrome from Stigmatella aurantiaca is an unusual member of the bacteriophytochrome family that is devoid of hydrogen bonding to the carbonyl group of ring D of the biliverdin (BV) chromophore. The photodynamics of BV in SaBphP1 wild type and the single mutant T289H reintroducing hydrogen bonding to ring D show that the strength of this particular weak interaction determines excited-state lifetime, Lumi-R quantum yield, and spectral heterogeneity. In particular, excited-state decay is faster in the absence of hydrogen-bonding to ring D, with excited-state half-lives of 30 and 80 ps for wild type and the T289H mutant, respectively. Concomitantly, the Lumi-R quantum yield is two times higher in wild type as compared with the T289H mutant. Furthermore, the spectral heterogeneity in the wild type is significantly higher than that in the T289H mutant. By extending the observable time domain to 25 μs, we observe a new deactivation pathway from the Lumi-R intermediate in the 100 ns time domain that corresponds to a backflip of ring D to the original Pr 15Za isomeric state.

Entities:  

Keywords:  biliverdin; hydrogen bonding; near-IR fluorescent protein; photoreceptor

Mesh:

Substances:

Year:  2014        PMID: 26263456     DOI: 10.1021/jz502408n

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  14 in total

1.  The interplay between chromophore and protein determines the extended excited state dynamics in a single-domain phytochrome.

Authors:  Chavdar Slavov; Tobias Fischer; Avishai Barnoy; Heewhan Shin; Aditya G Rao; Christian Wiebeler; Xiaoli Zeng; Yafang Sun; Qianzhao Xu; Alexander Gutt; Kai-Hong Zhao; Wolfgang Gärtner; Xiaojing Yang; Igor Schapiro; Josef Wachtveitl
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-26       Impact factor: 11.205

2.  Elucidating the Molecular Mechanism of Ultrafast Pfr-State Photoisomerization in Bathy Bacteriophytochrome PaBphP.

Authors:  Dihao Wang; Yangzhong Qin; Sheng Zhang; Lijuan Wang; Xiaojing Yang; Dongping Zhong
Journal:  J Phys Chem Lett       Date:  2019-10-02       Impact factor: 6.475

3.  Protonation Heterogeneity Modulates the Ultrafast Photocycle Initiation Dynamics of Phytochrome Cph1.

Authors:  Julia S Kirpich; L Tyler Mix; Shelley S Martin; Nathan C Rockwell; J Clark Lagarias; Delmar S Larsen
Journal:  J Phys Chem Lett       Date:  2018-06-11       Impact factor: 6.475

4.  Conserved histidine and tyrosine determine spectral responses through the water network in Deinococcus radiodurans phytochrome.

Authors:  Heli Lehtivuori; Jessica Rumfeldt; Satu Mustalahti; Sami Kurkinen; Heikki Takala
Journal:  Photochem Photobiol Sci       Date:  2022-07-29       Impact factor: 4.328

5.  On the Role of the Conserved Histidine at the Chromophore Isomerization Site in Phytochromes.

Authors:  Anastasia Kraskov; David Buhrke; Patrick Scheerer; Ida Shaef; Juan C Sanchez; Melissa Carrillo; Moraima Noda; Denisse Feliz; Emina A Stojković; Peter Hildebrandt
Journal:  J Phys Chem B       Date:  2021-11-29       Impact factor: 3.466

6.  Correlating structural and photochemical heterogeneity in cyanobacteriochrome NpR6012g4.

Authors:  Sunghyuk Lim; Qinhong Yu; Sean M Gottlieb; Che-Wei Chang; Nathan C Rockwell; Shelley S Martin; Dorte Madsen; J Clark Lagarias; Delmar S Larsen; James B Ames
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-09       Impact factor: 11.205

7.  High-resolution crystal structures of transient intermediates in the phytochrome photocycle.

Authors:  Melissa Carrillo; Suraj Pandey; Juan Sanchez; Moraima Noda; Ishwor Poudyal; Luis Aldama; Tek Narsingh Malla; Elin Claesson; Weixiao Yuan Wahlgren; Denisse Feliz; Vukica Šrajer; Michał Maj; Leticia Castillon; So Iwata; Eriko Nango; Rie Tanaka; Tomoyuki Tanaka; Luo Fangjia; Kensuke Tono; Shigeki Owada; Sebastian Westenhoff; Emina A Stojković; Marius Schmidt
Journal:  Structure       Date:  2021-03-22       Impact factor: 5.006

8.  Bright blue-shifted fluorescent proteins with Cys in the GAF domain engineered from bacterial phytochromes: fluorescence mechanisms and excited-state dynamics.

Authors:  Yusaku Hontani; Daria M Shcherbakova; Mikhail Baloban; Jingyi Zhu; Vladislav V Verkhusha; John T M Kennis
Journal:  Sci Rep       Date:  2016-11-18       Impact factor: 4.379

9.  Reaction dynamics of the chimeric channelrhodopsin C1C2.

Authors:  Yusaku Hontani; Marco Marazzi; Katja Stehfest; Tilo Mathes; Ivo H M van Stokkum; Marcus Elstner; Peter Hegemann; John T M Kennis
Journal:  Sci Rep       Date:  2017-08-03       Impact factor: 4.379

10.  Fast Photochemistry of Prototypical Phytochromes-A Species vs. Subunit Specific Comparison.

Authors:  Janne A Ihalainen; Heikki Takala; Heli Lehtivuori
Journal:  Front Mol Biosci       Date:  2015-12-23
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