Literature DB >> 2626059

Control analysis of time-dependent metabolic systems.

L Acerenza1, H M Sauro, H Kacser.   

Abstract

Metabolic Control Analysis is extended to time dependent systems. It is assumed that the time derivative of the metabolite concentrations can be written as a linear combination of rate laws, each one of first order with respect to the corresponding enzyme concentration. The definitions of the control and elasticity coefficients are extended, and a new type of coefficient ("time coefficient", "T") is defined. First, we prove that simultaneous changes in all enzyme concentrations by the same arbitrary factor, is equivalent to a change in the time scale. When infinitesimal changes are considered, these arguments lead to the derivation of general summation theorems that link control and time coefficients. The comparison of two systems with identical rates, that only differ in one metabolite concentration, leads to a method for the construction of general connectivity theorems, that relate control and elasticity coefficients. A mathematical proof in matrix form, of the summation and connectivity relationships, for time dependent systems is given. Those relationships allow one to express the control coefficients in terms of the elasticity and time coefficients for the case of unbranched pathway.

Mesh:

Year:  1989        PMID: 2626059     DOI: 10.1016/s0022-5193(89)80038-4

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  13 in total

1.  Control analysis for autonomously oscillating biochemical networks.

Authors:  Karin A Reijenga; Hans V Westerhoff; Boris N Kholodenko; Jacky L Snoep
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

2.  Transition time control analysis of a glycolytic system under different glucose concentrations. Control of transition time versus control of flux.

Authors:  N V Torres; E Meléndez-Hevia
Journal:  Mol Cell Biochem       Date:  1992-06-26       Impact factor: 3.396

Review 3.  Metabolic control analysis: a survey of its theoretical and experimental development.

Authors:  D A Fell
Journal:  Biochem J       Date:  1992-09-01       Impact factor: 3.857

4.  Analysis and characterization of transition states in metabolic systems. Transition times and the passivity of the output flux.

Authors:  N V Torres; J Sicilia; E Meléndez-Hevia
Journal:  Biochem J       Date:  1991-05-15       Impact factor: 3.857

Review 5.  Quantitative approaches to the analysis of the control and regulation of microbial metabolism.

Authors:  H V Westerhoff; W van Heeswijk; D Kahn; D B Kell
Journal:  Antonie Van Leeuwenhoek       Date:  1991 Oct-Nov       Impact factor: 2.271

6.  Control analysis of transition times. Extension of analysis and matrix method.

Authors:  M Cascante; N V Torres; R Franco; E Meléndez-Hevia; E I Canela
Journal:  Mol Cell Biochem       Date:  1991-02-27       Impact factor: 3.396

7.  Enzyme kinetics and metabolic control. A method to test and quantify the effect of enzymic properties on metabolic variables.

Authors:  L Acerenza; H Kacser
Journal:  Biochem J       Date:  1990-08-01       Impact factor: 3.857

8.  Integration of temporal analysis and control analysis of metabolic systems.

Authors:  J S Easterby
Journal:  Biochem J       Date:  1990-07-01       Impact factor: 3.857

9.  Approaches to biosimulation of cellular processes.

Authors:  F J Bruggeman; H V Westerhoff
Journal:  J Biol Phys       Date:  2006-11-11       Impact factor: 1.365

10.  Computational functions in biochemical reaction networks.

Authors:  A Arkin; J Ross
Journal:  Biophys J       Date:  1994-08       Impact factor: 4.033

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