Literature DB >> 26255959

Gene Regulation Gets in Tune: How Riboswitch Tertiary-Structure Networks Adapt to Meet the Needs of Their Transcription Units.

Debapratim Dutta1, Joseph E Wedekind2.   

Abstract

Entities:  

Keywords:  Gene regulation; RNA folding; Review; SAM-I riboswitch; Transcription

Mesh：

Substances：

Year:  2015        PMID： 26255959      PMCID： PMC4710353          DOI： 10.1016/j.jmb.2015.08.001

Source DB:  PubMed          Journal:  J Mol Biol        ISSN： 0022-2836            Impact factor:   5.469


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  32 in total

Review 1.  Beyond kinetic traps in RNA folding.

Authors:  D K Treiber; J R Williamson
Journal:  Curr Opin Struct Biol       Date:  2001-06       Impact factor: 6.809

Review 2.  Recognition of S-adenosylmethionine by riboswitches.

Authors:  Robert T Batey
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-01-12       Impact factor: 9.957

Review 3.  Riboswitches as antibacterial drug targets.

Authors:  Kenneth F Blount; Ronald R Breaker
Journal:  Nat Biotechnol       Date:  2006-12       Impact factor: 54.908

4.  Folding of the SAM aptamer is determined by the formation of a K-turn-dependent pseudoknot.

Authors:  Benoit Heppell; Daniel A Lafontaine
Journal:  Biochemistry       Date:  2008-01-19       Impact factor: 3.162

5.  Structure of the S-adenosylmethionine riboswitch regulatory mRNA element.

Authors:  Rebecca K Montange; Robert T Batey
Journal:  Nature       Date:  2006-06-29       Impact factor: 49.962

6.  A tertiary structural element in S box leader RNAs is required for S-adenosylmethionine-directed transcription termination.

Authors:  Brooke A McDaniel; Frank J Grundy; Tina M Henkin
Journal:  Mol Microbiol       Date:  2005-08       Impact factor: 3.501

Review 7.  Genetic control by cis-acting regulatory RNAs in Bacillus subtilis: general principles and prospects for discovery.

Authors:  A Kertsburg; W C Winkler
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2006

8.  Thiamine pyrophosphate riboswitches are targets for the antimicrobial compound pyrithiamine.

Authors:  Narasimhan Sudarsan; Smadar Cohen-Chalamish; Shingo Nakamura; Gail Mitchell Emilsson; Ronald R Breaker
Journal:  Chem Biol       Date:  2005-12

9.  Free state conformational sampling of the SAM-I riboswitch aptamer domain.

Authors:  Colby D Stoddard; Rebecca K Montange; Scott P Hennelly; Robert P Rambo; Karissa Y Sanbonmatsu; Robert T Batey
Journal:  Structure       Date:  2010-07-14       Impact factor: 5.006

10.  A Highly Coupled Network of Tertiary Interactions in the SAM-I Riboswitch and Their Role in Regulatory Tuning.

Authors:  Christopher Wostenberg; Pablo Ceres; Jacob T Polaski; Robert T Batey
Journal:  J Mol Biol       Date:  2015-09-03       Impact factor: 5.469
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  1 in total

1.  Nucleobase mutants of a bacterial preQ1-II riboswitch that uncouple metabolite sensing from gene regulation.

Authors:  Debapratim Dutta; Joseph E Wedekind
Journal:  J Biol Chem       Date:  2019-10-28       Impact factor: 5.157
  1 in total

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