Literature DB >> 26253974

Pseudouridine Chemical Labeling and Profiling.

Xiaoyu Li1, Shiqing Ma2, Chengqi Yi3.   

Abstract

Pseudouridine (Ψ) is the most abundant posttranscriptional RNA modification; yet little is known about its prevalence and function in messenger RNA, mostly due to the challenges in the transcriptome-wide detection of Ψ. Here, we report CeU-Seq-a selective chemical labeling and pull-down method for the comprehensive analysis of transcriptome-wide pseudouridylation; this sequencing method will hopefully pave the way for functional studies of Ψ-mediated biological regulation in the future.
© 2015 Elsevier Inc. All rights reserved.

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Keywords:  Chemical pull down; Pseudouridine; Selective labeling; Single-base resolution; Transcriptome-wide profiling; Whole-genome sequencing; mRNA modification

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Year:  2015        PMID: 26253974     DOI: 10.1016/bs.mie.2015.03.010

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  3 in total

1.  Harnessing Nature's Molecular Recognition Capabilities to Map and Study RNA Modifications.

Authors:  Ansley S Felix; Alexandria L Quillin; Shikufa Mousavi; Jennifer M Heemstra
Journal:  Acc Chem Res       Date:  2022-07-28       Impact factor: 24.466

Review 2.  Methods for RNA Modification Mapping Using Deep Sequencing: Established and New Emerging Technologies.

Authors:  Yuri Motorin; Mark Helm
Journal:  Genes (Basel)       Date:  2019-01-09       Impact factor: 4.096

Review 3.  Analysis of RNA Modifications by Second- and Third-Generation Deep Sequencing: 2020 Update.

Authors:  Yuri Motorin; Virginie Marchand
Journal:  Genes (Basel)       Date:  2021-02-16       Impact factor: 4.096

  3 in total

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