| Literature DB >> 26252489 |
Wenqiao Hui1, Song Jiang2, Jishun Tang3, Hongyan Hou3, Sheng Chen3, Bin Jia2, Qian Ban4.
Abstract
BACKGROUND: Cystic Echinococcosis(CE), caused by infection with the larval stage of the cestode Echinococcus granulosus (E. granulosus), is a chronic parasitic zoonosis, with highly susceptible infection in sheep. However, the comprehensive molecular mechanisms that underlie the process of E. granulosus infection in the early stage remain largely unknown. The objective of this present study was to gain a cluster of genes expression profiles in the intestine tissue of sheep infected with CE.Entities:
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Year: 2015 PMID: 26252489 PMCID: PMC4529311 DOI: 10.1371/journal.pone.0135096
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Primer sequence for qRT-PCR analysis of gene transcripts.
| Gene | Primer sequences (5’-3’) | Annealing temperature (°C) | Expected size (bp) |
|---|---|---|---|
| GAPDH | F: | 59.0 | 149 |
| R: | |||
| MCP1 | F: | 55.0 | 283 |
| R: | |||
| KLRJ1 | F: | 50.0 | 141 |
| R: | |||
| CII-TA | F: | 57.0 | 209 |
| R: | |||
| CXCL17 | F: | 55.0 | 109 |
| R: | |||
| ITLN2 | F: | 55.0 | 236 |
| R: | |||
| FCER1A | F: | 49.0 | 167 |
| R: | |||
| SLC2A5 | F: | 53.0 | 196 |
| R: | |||
| CXCR6 | F: | 55.0 | 180 |
| R: | |||
| TNFR1 | F: | 59.0 | 221 |
| R: |
Partial differential expression genes in the intestine, organized according to their function groups.
| Gene | Accession number | Gene ID | Description | Ratio | |
|---|---|---|---|---|---|
| A vC | BvC | ||||
|
| |||||
| Lysozyme C2 | NM_180999.1 | 30794293 | lysozyme C-2 | 27.0 | 28.1 |
| ITLN2 | NM_001104934.1 | 100125357 | intelectin 2 | 92.0 | 93.5 |
|
| |||||
| Nature killer cells (NK cell) | |||||
| KIR2DS1 | NM_001097567.1 | 493737 | killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 1 | 5.1 | 2.4 |
| KLRJ1 | NM_001002884.1 | 444861 | killer cell lectin-like receptor family J member 1 | 16.1 | 9.6 |
| MPTX | NM_001034227.1 | 504879 | putative mucosal pentraxin homolog (MPTX), mRNA | 11.7 | 13.0 |
| Mast cell | |||||
| MCP3 | NM_001009411.1 | 443429 | mast cell proteinase-3 | 43.1 | 31.4 |
| MCP1 | NM_001009472.1 | 443546 | mast cell proteinase-1 | 42.4 | 31.1 |
| IgE Fc receptor | NM_001123004.1 | 100144427 | Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide | 24.7 | 37.7 |
| IRAK4 | NM_001142514.1 | 100216438 | interleukin-1 receptor-associated kinase 4 | 2.7 | 2.7 |
| Macrophages | |||||
| IL-6 | NM_001009392.1 | 443406 | interleukin 6 | 4.9 | 5.0 |
| Innate-like lymphocytes (ILLS):B1 cell | |||||
| IgM | AY145128.1 | 24496448 | immunoglobulin M heavy chain | 10.2 | 12.4 |
|
| |||||
| Cytokines and Chemokines | |||||
| Th1 cytokines and related chemokines | |||||
| IL-2 | NM_001009806.1 | 443401 | interleukin 2 | 2.7 | 2.6 |
| IL-3 | NM_001009420.2 | 443438 | Ovisaries interleukin 3 (colony-stimulating factor, multiple) (IL3), mRNA | 3.4 | 3.8 |
| TNF13 B | NM_001114506.1 | 504507 | tumor necrosis factor (ligand) superfamily, member 13b | 2.3 | 3.4 |
| CXCL2 | NM_001046513.1 | 613667 | chemokine (C-X-C motif) ligand 2 | 2.8 | 4.7 |
| CXCL5 | NM_174300.2 | 281735 | chemokine (C-X-C motif) ligand 5 | 2.8 | 5.2 |
| CXCL9 | NM_001113172.1 | 513990 | chemokine (C-X-C motif) ligand 9 | 2.0 | 2.0 |
| CXCL17 | NM_001083799.1 | 788717 | chemokine (C-X-C motif) ligand 17 | 4.2 | 4.7 |
| CCL28 | NM_001129903.1 | 780500 | chemokine (C-C motif) ligand 28 | 3.2 | 2.4 |
| Th2 cytokines and related chemokines | |||||
| IL-13 | NM_001082594.1 | 664707 | interleukin 13 | 3.8 | 5.2 |
| CCR4 | NM_001100293.1 | 408019 | chemokine (C-C motif) receptor 4 | 2.8 | 4.0 |
| CCR3 | NM_001009241.1 | 443111 | chemokine (C-C motif) receptor 3 | 2.7 | 3.1 |
| Complement | |||||
| C4BP | XM_002693873.1 | 515150 | complement component 4 binding protein, alpha chain-like (LOC515150), mRNA | 7.7 | 8.0 |
| CFHR5 (C8BP) | XM_514078.2 | 457605 | complement factor H-related 5 (CFHR5), mRNA | 3.8 | 7.2 |
|
| |||||
| CIITA | XM_858458.1 | 73958939 | MHC class II transactivator, transcript variant 3 | 8.9 | 5.5 |
|
| |||||
| SLC5A6 | NM_001177622.1 | 330064 | solute carrier family 5 (sodium-dependent vitamin transporter), member 6 | 223 | 102.1 |
| TM4SF4 | NM_001034306.1 | 507646 | transmembrane 4 L six family member 4 | 58.6 | 53.5 |
| SLC2A5 | NM_001009451.1 | 443507 | solute carrier family 2 (facilitated glucose/fructose transporter), member 5 | 34.0 | 48.8 |
| UGT2A3 | NM_001098944.1 | 511743 | UDP glucuronosyltransferase 2 family, polypeptide A3 | 26.6 | 25.8 |
| PDE6C | NM_174419.1 | 281975 | phosphodiesterase 6C, cGMP-specific, cone, alpha prime | 21.1 | 19.4 |
|
| |||||
| CXCR6 | NM_001014859.1 | 506807 | chemokine (C-X-C motif) receptor 6 | 2.3 | 2.4 |
| CXCL1 | XM_002694885.1 | 517354 | chemokine (C-X-C motif) ligand 1 | 4.7 | 4.6 |
| TNFR21 | NM_001076911.1 | 537922 | tumor necrosis factor receptor superfamily, member 21 | 2.7 | 3.8 |
| TNFR1 | NM_001166185.1 | 100135698 | tumor necrosis factor receptor superfamily, member 1A | 2.8 | 2.5 |
| C1QTNF6 | NM_001101872.1 | 506413 | C1q and tumor necrosis factor related protein 6 | 2.5 | 3.5 |
Note: Table 2 shows partially differential expression genes (E. granulosus challenged at four hour vs. Healthy controls) with P-value<0.05 and fold change (FC)≥2, which were listed with their respective function.
Fig 1Validation of microarray data by qPCR on 9 randomly selected genes.
Real-time PCR was employed to verify the regulation of genes detected by microarray. Nine differential expression genes were randomly selected as quantitative real-time PCR analysis. The GAPDH was used as an internal control.
Fig 2Schematic diagram summarizing interaction linked to differential expression genes in the intestine tissue of sheep infected with CE.
Interaction of immune cell/molecular in the intestine tissue of sheep infected with CE as suggested by the pattern of differential expression genes listed in Table 2.