Literature DB >> 26249708

Crystallization and crystallographic analysis of branching enzymes from Cyanothece sp. ATCC 51142.

Mari Hayashi1, Ryuichiro Suzuki1, Christophe Colleoni2, Steven G Ball2, Naoko Fujita1, Eiji Suzuki1.   

Abstract

Several cyanobacterial species, including Cyanothece sp. ATCC 51142, remarkably have four isoforms of α-glucan branching enzymes (BEs). Based on their primary structures, they are classified into glycoside hydrolase (GH) family 13 (BE1, BE2 and BE3) or family 57 (GH57 BE). In the present study, GH13-type BEs from Cyanothece sp. ATCC 51142 (BE1, BE2 and BE3) have been overexpressed in Escherichia coli and biochemically characterized. The recombinant BE1 was crystallized by the hanging-drop vapour-diffusion method. Crystals of BE1 were obtained at 293 K in the presence of 0.2 M Mg(2+), 7-10%(w/v) ethanol, 0.1 M HEPES-NaOH pH 7.2-7.9. The crystals belonged to the tetragonal space group P41212, with unit-cell parameters a = b = 133.75, c = 185.90 Å, and diffracted to beyond 1.85 Å resolution. Matthews coefficient calculations suggested that the crystals of BE1 contained two molecules in the asymmetric unit.

Entities:  

Keywords:  Cyanothece; amylopectin; branching enzyme; cyanobacteria; glycogen

Mesh:

Substances:

Year:  2015        PMID: 26249708      PMCID: PMC4528950          DOI: 10.1107/S2053230X1501198X

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  19 in total

1.  Dividing the large glycoside hydrolase family 13 into subfamilies: towards improved functional annotations of alpha-amylase-related proteins.

Authors:  Mark R Stam; Etienne G J Danchin; Corinne Rancurel; Pedro M Coutinho; Bernard Henrissat
Journal:  Protein Eng Des Sel       Date:  2006-11-02       Impact factor: 1.650

2.  Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.

Authors:  Junji Noguchi; Kimiko Chaen; Nhuan Thi Vu; Taiki Akasaka; Hiroaki Shimada; Takashi Nakashima; Aiko Nishi; Hikaru Satoh; Toshiro Omori; Yoshimitsu Kakuta; Makoto Kimura
Journal:  Glycobiology       Date:  2011-04-14       Impact factor: 4.313

3.  Crystal structure of full-length Mycobacterium tuberculosis H37Rv glycogen branching enzyme: insights of N-terminal beta-sandwich in substrate specificity and enzymatic activity.

Authors:  Kuntal Pal; Shiva Kumar; Shikha Sharma; Saurabh Kumar Garg; Mohammad Suhail Alam; H Eric Xu; Pushpa Agrawal; Kunchithapadam Swaminathan
Journal:  J Biol Chem       Date:  2010-05-05       Impact factor: 5.157

4.  Diversity of reaction characteristics of glucan branching enzymes and the fine structure of α-glucan from various sources.

Authors:  Takayuki Sawada; Yasunori Nakamura; Takashi Ohdan; Asami Saitoh; Perigio B Francisco; Eiji Suzuki; Naoko Fujita; Takahiro Shimonaga; Shoko Fujiwara; Mikio Tsuzuki; Christophe Colleoni; Steven Ball
Journal:  Arch Biochem Biophys       Date:  2014-08-07       Impact factor: 4.013

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  Biochemical and genetic analysis of the effects of amylose-extender mutation in rice endosperm.

Authors:  A Nishi; Y Nakamura; N Tanaka; H Satoh
Journal:  Plant Physiol       Date:  2001-10       Impact factor: 8.340

7.  Structural and enzymatic characterization of the isoamylase1 homo-oligomer and the isoamylase1-isoamylase2 hetero-oligomer from rice endosperm.

Authors:  Yoshinori Utsumi; Yasunori Nakamura
Journal:  Planta       Date:  2006-09-05       Impact factor: 4.116

8.  The unique branching patterns of Deinococcus glycogen branching enzymes are determined by their N-terminal domains.

Authors:  M Palomo; S Kralj; M J E C van der Maarel; L Dijkhuizen
Journal:  Appl Environ Microbiol       Date:  2009-01-09       Impact factor: 4.792

Review 9.  Towards a better understanding of the metabolic system for amylopectin biosynthesis in plants: rice endosperm as a model tissue.

Authors:  Yasunori Nakamura
Journal:  Plant Cell Physiol       Date:  2002-07       Impact factor: 4.927

10.  The X-ray crystallographic structure of Escherichia coli branching enzyme.

Authors:  Marta C Abad; Kim Binderup; Jorge Rios-Steiner; Raghuvir K Arni; Jack Preiss; James H Geiger
Journal:  J Biol Chem       Date:  2002-08-23       Impact factor: 5.157

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  2 in total

1.  Bound Substrate in the Structure of Cyanobacterial Branching Enzyme Supports a New Mechanistic Model.

Authors:  Mari Hayashi; Ryuichiro Suzuki; Christophe Colleoni; Steven G Ball; Naoko Fujita; Eiji Suzuki
Journal:  J Biol Chem       Date:  2017-02-13       Impact factor: 5.157

Review 2.  Distribution of glucan-branching enzymes among prokaryotes.

Authors:  Eiji Suzuki; Ryuichiro Suzuki
Journal:  Cell Mol Life Sci       Date:  2016-05-03       Impact factor: 9.261

  2 in total

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