Literature DB >> 26248273

A deconvolution-based approach to identifying large-scale effective connectivity.

Keith Bush1, Suijian Zhou2, Josh Cisler3, Jiang Bian4, Onder Hazaroglu5, Keenan Gillispie6, Kenji Yoshigoe7, Clint Kilts8.   

Abstract

Rapid, robust computation of effective connectivity between neural regions is an important next step in characterizing the brain's organization, particularly in the resting state. However, recent work has called into question the value of causal inference computed directly from BOLD, demonstrating that valid inferences require transformation of the BOLD signal into its underlying neural events as necessary for accurate causal inference. In this work we develop an approach for effective connectivity estimation directly from deconvolution-based features and estimates of inter-regional communication lag. We then test, in both simulation as well as whole-brain fMRI BOLD signal, the viability of this approach. Our results show that deconvolution precision and network size play outsized roles in effective connectivity estimation performance. Idealized simulation conditions allow for statistically significant effective connectivity estimation of networks of up to four hundred regions-of-interest (ROIs). Under simulation of realistic recording conditions and deconvolution performance, however, our result indicates that effective connectivity is viable in networks containing up to approximately sixty ROIs. We then validated the ability for the proposed method to reliably detect effective connectivity in whole-brain fMRI signal parcellated into networks of viable size.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  BOLD; Deconvolution; Effective connectivity; Imaging analysis; fMRI

Mesh:

Year:  2015        PMID: 26248273      PMCID: PMC4658309          DOI: 10.1016/j.mri.2015.07.015

Source DB:  PubMed          Journal:  Magn Reson Imaging        ISSN: 0730-725X            Impact factor:   2.546


  41 in total

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Authors: 
Journal:  Trends Cogn Sci       Date:  1999-03       Impact factor: 20.229

Review 2.  A short history of causal modeling of fMRI data.

Authors:  Klaas Enno Stephan; Alard Roebroeck
Journal:  Neuroimage       Date:  2012-01-10       Impact factor: 6.556

Review 3.  Advances in functional and structural MR image analysis and implementation as FSL.

Authors:  Stephen M Smith; Mark Jenkinson; Mark W Woolrich; Christian F Beckmann; Timothy E J Behrens; Heidi Johansen-Berg; Peter R Bannister; Marilena De Luca; Ivana Drobnjak; David E Flitney; Rami K Niazy; James Saunders; John Vickers; Yongyue Zhang; Nicola De Stefano; J Michael Brady; Paul M Matthews
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

4.  Resting-state functional connectivity reflects structural connectivity in the default mode network.

Authors:  Michael D Greicius; Kaustubh Supekar; Vinod Menon; Robert F Dougherty
Journal:  Cereb Cortex       Date:  2008-04-09       Impact factor: 5.357

5.  Dynamic causal modelling.

Authors:  K J Friston; L Harrison; W Penny
Journal:  Neuroimage       Date:  2003-08       Impact factor: 6.556

6.  Multimodal image coregistration and partitioning--a unified framework.

Authors:  J Ashburner; K Friston
Journal:  Neuroimage       Date:  1997-10       Impact factor: 6.556

7.  Visual inspection of independent components: defining a procedure for artifact removal from fMRI data.

Authors:  Robert E Kelly; George S Alexopoulos; Zhishun Wang; Faith M Gunning; Christopher F Murphy; Sarah Shizuko Morimoto; Dora Kanellopoulos; Zhiru Jia; Kelvin O Lim; Matthew J Hoptman
Journal:  J Neurosci Methods       Date:  2010-04-08       Impact factor: 2.390

Review 8.  The WU-Minn Human Connectome Project: an overview.

Authors:  David C Van Essen; Stephen M Smith; Deanna M Barch; Timothy E J Behrens; Essa Yacoub; Kamil Ugurbil
Journal:  Neuroimage       Date:  2013-05-16       Impact factor: 6.556

9.  Identifying neural drivers with functional MRI: an electrophysiological validation.

Authors:  Olivier David; Isabelle Guillemain; Sandrine Saillet; Sebastien Reyt; Colin Deransart; Christoph Segebarth; Antoine Depaulis
Journal:  PLoS Biol       Date:  2008-12-23       Impact factor: 8.029

10.  Exploring the anatomical basis of effective connectivity models with DTI-based fiber tractography.

Authors:  Hubert M J Fonteijn; David G Norris; Frans A J Verstraten
Journal:  Int J Biomed Imaging       Date:  2008
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