Literature DB >> 26244727

Protein-Assisted DNA Looping: A Delicate Balance among Interactions, Mechanics, and Entropy.

Anatoly B Kolomeisky1.   

Abstract

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Year:  2015        PMID： 26244727      PMCID： PMC4571003          DOI： 10.1016/j.bpj.2015.06.055

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


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  11 in total

1.  Spontaneous sharp bending of double-stranded DNA.

Authors:  Timothy E Cloutier; Jonathan Widom
Journal:  Mol Cell       Date:  2004-05-07       Impact factor: 17.970

Review 2.  DNA looping.

Authors:  R Schleif
Journal:  Annu Rev Biochem       Date:  1992       Impact factor: 23.643

Review 3.  Physics of protein-DNA interactions: mechanisms of facilitated target search.

Authors:  Anatoly B Kolomeisky
Journal:  Phys Chem Chem Phys       Date:  2010-11-29       Impact factor: 3.676

4.  Interplay of Protein Binding Interactions, DNA Mechanics, and Entropy in DNA Looping Kinetics.

Authors:  Peter J Mulligan; Yi-Ju Chen; Rob Phillips; Andrew J Spakowitz
Journal:  Biophys J       Date:  2015-08-04       Impact factor: 4.033

5.  Cyclization of short DNA fragments and bending fluctuations of the double helix.

Authors:  Quan Du; Chaim Smith; Nahum Shiffeldrim; Maria Vologodskaia; Alexander Vologodskii
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-04       Impact factor: 11.205

6.  Statistical-mechanical theory of DNA looping.

Authors:  Yongli Zhang; Abbye E McEwen; Donald M Crothers; Stephen D Levene
Journal:  Biophys J       Date:  2005-12-16       Impact factor: 4.033

Review 7.  Loops in DNA: an overview of experimental and theoretical approaches.

Authors:  J-F Allemand; S Cocco; N Douarche; G Lia
Journal:  Eur Phys J E Soft Matter       Date:  2006-03-23       Impact factor: 1.890

8.  Looping dynamics of linear DNA molecules and the effect of DNA curvature: a study by Brownian dynamics simulation.

Authors:  H Merlitz; K Rippe; K V Klenin; J Langowski
Journal:  Biophys J       Date:  1998-02       Impact factor: 4.033

Review 9.  DNA looping in prokaryotes: experimental and theoretical approaches.

Authors:  Axel Cournac; Jacqueline Plumbridge
Journal:  J Bacteriol       Date:  2013-01-04       Impact factor: 3.490

10.  Kinetics of loop formation in polymer chains.

Authors:  Ngo Minh Toan; Greg Morrison; Changbong Hyeon; D Thirumalai
Journal:  J Phys Chem B       Date:  2008-02-13       Impact factor: 2.991
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