Literature DB >> 26242913

Phosphorylation-induced Conformational Ensemble Switching in an Intrinsically Disordered Cancer/Testis Antigen.

Yanan He1, Yihong Chen1, Steven M Mooney2, Krithika Rajagopalan2, Ajay Bhargava3, Elizabeth Sacho4, Keith Weninger4, Philip N Bryan5, Prakash Kulkarni6, John Orban7.   

Abstract

Prostate-associated gene 4 (PAGE4) is an intrinsically disordered cancer/testis antigen that is up-regulated in the fetal and diseased human prostate. Knocking down PAGE4 expression results in cell death, whereas its overexpression leads to a growth advantage of prostate cancer cells (Zeng, Y., He, Y., Yang, F., Mooney, S. M., Getzenberg, R. H., Orban, J., and Kulkarni, P. (2011) The cancer/testis antigen prostate-associated gene 4 (PAGE4) is a highly intrinsically disordered protein. J. Biol. Chem. 286, 13985-13994). Phosphorylation of PAGE4 at Thr-51 is critical for potentiating c-Jun transactivation, an important factor in controlling cell growth, apoptosis, and stress response. Using NMR spectroscopy, we show that the PAGE4 polypeptide chain has local and long-range conformational preferences that are perturbed by site-specific phosphorylation at Thr-51. The population of transient turn-like structures increases upon phosphorylation in an ∼20-residue acidic region centered on Thr-51. This central region therefore becomes more compact and more negatively charged, with increasing intramolecular contacts to basic sequence motifs near the N and C termini. Although flexibility is decreased in the central region of phospho-PAGE4, the polypeptide chain remains highly dynamic overall. PAGE4 utilizes a transient helical structure adjacent to the central acidic region to bind c-Jun with low affinity in vitro. The binding interaction is attenuated by phosphorylation at Thr-51, most likely because of masking the effects of the more compact phosphorylated state. Therefore, phosphorylation of PAGE4 leads to conformational shifts in the dynamic ensemble, with large functional consequences. The changes in the structural ensemble induced by posttranslational modifications are similar conceptually to the conformational switching events seen in some marginally stable ("metamorphic") folded proteins in response to mutation or environmental triggers.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  NMR; cancer/testis antigen; conformational change; intrinsically disordered protein; phosphorylation; prostate cancer; prostate-associated gene 4

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Year:  2015        PMID: 26242913      PMCID: PMC4599013          DOI: 10.1074/jbc.M115.658583

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  65 in total

1.  Phosphorylation-induced structural changes in the amyloid precursor protein cytoplasmic tail detected by NMR.

Authors:  T A Ramelot; L K Nicholson
Journal:  J Mol Biol       Date:  2001-03-30       Impact factor: 5.469

Review 2.  Diverse functions of JNK signaling and c-Jun in stress response and apoptosis.

Authors:  S Leppä; D Bohmann
Journal:  Oncogene       Date:  1999-11-01       Impact factor: 9.867

Review 3.  Unusual biophysics of intrinsically disordered proteins.

Authors:  Vladimir N Uversky
Journal:  Biochim Biophys Acta       Date:  2012-12-23

4.  Expanding the proteome of an RNA virus by phosphorylation of an intrinsically disordered viral protein.

Authors:  Daniel G Cordek; Tayler J Croom-Perez; Jungwook Hwang; Michele R S Hargittai; Chennareddy V Subba-Reddy; Qingxia Han; Maria Fernanda Lodeiro; Gang Ning; Thomas S McCrory; Jamie J Arnold; Hasan Koc; Brett D Lindenbach; Scott A Showalter; Craig E Cameron
Journal:  J Biol Chem       Date:  2014-07-16       Impact factor: 5.157

5.  A majority of the cancer/testis antigens are intrinsically disordered proteins.

Authors:  Krithika Rajagopalan; Steven M Mooney; Nehal Parekh; Robert H Getzenberg; Prakash Kulkarni
Journal:  J Cell Biochem       Date:  2011-11       Impact factor: 4.429

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  Mdm-2 binding and TAF(II)31 recruitment is regulated by hydrogen bond disruption between the p53 residues Thr18 and Asp21.

Authors:  James R Jabbur; Amy D Tabor; Xiaodong Cheng; Hua Wang; Motonari Uesugi; Guillermina Lozano; Wei Zhang
Journal:  Oncogene       Date:  2002-10-10       Impact factor: 9.867

8.  The effects of guanidine hydrochloride on the 'random coil' conformations and NMR chemical shifts of the peptide series GGXGG.

Authors:  K W Plaxco; C J Morton; S B Grimshaw; J A Jones; M Pitkeathly; I D Campbell; C M Dobson
Journal:  J Biomol NMR       Date:  1997-10       Impact factor: 2.835

9.  Crystal structure of the heterodimeric bZIP transcription factor c-Fos-c-Jun bound to DNA.

Authors:  J N Glover; S C Harrison
Journal:  Nature       Date:  1995-01-19       Impact factor: 49.962

10.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

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  28 in total

Review 1.  Structural metamorphism and polymorphism in proteins on the brink of thermodynamic stability.

Authors:  Prakash Kulkarni; Tsega L Solomon; Yanan He; Yihong Chen; Philip N Bryan; John Orban
Journal:  Protein Sci       Date:  2018-09-24       Impact factor: 6.725

2.  Structural Impact of Phosphorylation and Dielectric Constant Variation on Synaptotagmin's IDR.

Authors:  Michael E Fealey; Benjamin P Binder; Vladimir N Uversky; Anne Hinderliter; David D Thomas
Journal:  Biophys J       Date:  2018-02-06       Impact factor: 4.033

3.  Phosphorylation-induced conformational dynamics in an intrinsically disordered protein and potential role in phenotypic heterogeneity.

Authors:  Prakash Kulkarni; Mohit Kumar Jolly; Dongya Jia; Steven M Mooney; Ajay Bhargava; Luciane T Kagohara; Yihong Chen; Pengyu Hao; Yanan He; Robert W Veltri; Alexander Grishaev; Keith Weninger; Herbert Levine; John Orban
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-13       Impact factor: 11.205

Review 4.  Modulation of Intrinsically Disordered Protein Function by Post-translational Modifications.

Authors:  Alaji Bah; Julie D Forman-Kay
Journal:  J Biol Chem       Date:  2016-02-05       Impact factor: 5.157

5.  Drugging the Undruggable: Targeting the N-Terminal Domain of Nuclear Hormone Receptors.

Authors:  Marianne D Sadar
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 3.650

Review 6.  Intrinsically Disordered Proteins: Critical Components of the Wetware.

Authors:  Prakash Kulkarni; Supriyo Bhattacharya; Srisairam Achuthan; Amita Behal; Mohit Kumar Jolly; Sourabh Kotnala; Atish Mohanty; Govindan Rangarajan; Ravi Salgia; Vladimir Uversky
Journal:  Chem Rev       Date:  2022-02-16       Impact factor: 72.087

7.  PAGE4 and Conformational Switching: Insights from Molecular Dynamics Simulations and Implications for Prostate Cancer.

Authors:  Xingcheng Lin; Susmita Roy; Mohit Kumar Jolly; Federico Bocci; Nicholas P Schafer; Min-Yeh Tsai; Yihong Chen; Yanan He; Alexander Grishaev; Keith Weninger; John Orban; Prakash Kulkarni; Govindan Rangarajan; Herbert Levine; José N Onuchic
Journal:  J Mol Biol       Date:  2018-06-05       Impact factor: 5.469

8.  Molecular Determinants of Tubulin's C-Terminal Tail Conformational Ensemble.

Authors:  Kathryn P Wall; Maria Pagratis; Geoffrey Armstrong; Jeremy L Balsbaugh; Eric Verbeke; Chad G Pearson; Loren E Hough
Journal:  ACS Chem Biol       Date:  2016-09-28       Impact factor: 5.100

Review 9.  Characterizing Post-Translational Modifications and Their Effects on Protein Conformation Using NMR Spectroscopy.

Authors:  Ajith Kumar; Vaishali Narayanan; Ashok Sekhar
Journal:  Biochemistry       Date:  2019-11-04       Impact factor: 3.162

Review 10.  Protein conformational dynamics and phenotypic switching.

Authors:  Prakash Kulkarni; Srisairam Achuthan; Supriyo Bhattacharya; Mohit Kumar Jolly; Sourabh Kotnala; Vitor B P Leite; Atish Mohanty; John Orban; Susmita Roy; Govindan Rangarajan; Ravi Salgia
Journal:  Biophys Rev       Date:  2021-11-27
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