Literature DB >> 26240518

VideoHacking: Automated Tracking and Quantification of Locomotor Behavior with Open Source Software and Off-the-Shelf Video Equipment.

Emily E Conklin1, Kathyann L Lee1, Sadie A Schlabach1, Ian G Woods1.   

Abstract

Differences in nervous system function can result in differences in behavioral output. Measurements of animal locomotion enable the quantification of these differences. Automated tracking of animal movement is less labor-intensive and bias-prone than direct observation, and allows for simultaneous analysis of multiple animals, high spatial and temporal resolution, and data collection over extended periods of time. Here, we present a new video-tracking system built on Python-based software that is free, open source, and cross-platform, and that can analyze video input from widely available video capture devices such as smartphone cameras and webcams. We validated this software through four tests on a variety of animal species, including larval and adult zebrafish (Danio rerio), Siberian dwarf hamsters (Phodopus sungorus), and wild birds. These tests highlight the capacity of our software for long-term data acquisition, parallel analysis of multiple animals, and application to animal species of different sizes and movement patterns. We applied the software to an analysis of the effects of ethanol on thigmotaxis (wall-hugging) behavior on adult zebrafish, and found that acute ethanol treatment decreased thigmotaxis behaviors without affecting overall amounts of motion. The open source nature of our software enables flexibility, customization, and scalability in behavioral analyses. Moreover, our system presents a free alternative to commercial video-tracking systems and is thus broadly applicable to a wide variety of educational settings and research programs.

Entities:  

Keywords:  Python; ethanol; open source; thigmotaxis; video tracking; zebrafish

Year:  2015        PMID: 26240518      PMCID: PMC4521726     

Source DB:  PubMed          Journal:  J Undergrad Neurosci Educ        ISSN: 1544-2896


  14 in total

Review 1.  EthoVision: a versatile video tracking system for automation of behavioral experiments.

Authors:  L P Noldus; A J Spink; R A Tegelenbosch
Journal:  Behav Res Methods Instrum Comput       Date:  2001-08

2.  Effects of acute and chronic ethanol exposure on the behavior of adult zebrafish (Danio rerio).

Authors:  Robert Gerlai; Vallent Lee; Rachel Blaser
Journal:  Pharmacol Biochem Behav       Date:  2006-12-29       Impact factor: 3.533

3.  Stages of embryonic development of the zebrafish.

Authors:  C B Kimmel; W W Ballard; S R Kimmel; B Ullmann; T F Schilling
Journal:  Dev Dyn       Date:  1995-07       Impact factor: 3.780

4.  Olfactory exposure to males, including men, causes stress and related analgesia in rodents.

Authors:  Robert E Sorge; Loren J Martin; Kelsey A Isbester; Susana G Sotocinal; Sarah Rosen; Alexander H Tuttle; Jeffrey S Wieskopf; Erinn L Acland; Anastassia Dokova; Basil Kadoura; Philip Leger; Josiane C S Mapplebeck; Martina McPhail; Ada Delaney; Gustaf Wigerblad; Alan P Schumann; Tammie Quinn; Johannes Frasnelli; Camilla I Svensson; Wendy F Sternberg; Jeffrey S Mogil
Journal:  Nat Methods       Date:  2014-04-28       Impact factor: 28.547

5.  Neuropeptidergic signaling partitions arousal behaviors in zebrafish.

Authors:  Ian G Woods; David Schoppik; Veronica J Shi; Steven Zimmerman; Haley A Coleman; Joel Greenwood; Edward R Soucy; Alexander F Schier
Journal:  J Neurosci       Date:  2014-02-26       Impact factor: 6.167

Review 6.  Drugs, flies, and videotape: the effects of ethanol and cocaine on Drosophila locomotion.

Authors:  Adrian Rothenfluh; Ulrike Heberlein
Journal:  Curr Opin Neurobiol       Date:  2002-12       Impact factor: 6.627

7.  iPhone® applications as versatile video tracking tools to analyze behavior in zebrafish (Danio rerio).

Authors:  Julian T Pittman; Katie M Ichikawa
Journal:  Pharmacol Biochem Behav       Date:  2013-04-02       Impact factor: 3.533

8.  Zebrafish behavioral profiling links drugs to biological targets and rest/wake regulation.

Authors:  Jason Rihel; David A Prober; Anthony Arvanites; Kelvin Lam; Steven Zimmerman; Sumin Jang; Stephen J Haggarty; David Kokel; Lee L Rubin; Randall T Peterson; Alexander F Schier
Journal:  Science       Date:  2010-01-15       Impact factor: 47.728

9.  High-throughput behavioral analysis in C. elegans.

Authors:  Nicholas A Swierczek; Andrew C Giles; Catharine H Rankin; Rex A Kerr
Journal:  Nat Methods       Date:  2011-06-05       Impact factor: 28.547

10.  Two different forms of arousal in Drosophila are oppositely regulated by the dopamine D1 receptor ortholog DopR via distinct neural circuits.

Authors:  Tim Lebestky; Jung-Sook C Chang; Heiko Dankert; Lihi Zelnik; Young-Cho Kim; Kyung-An Han; Fred W Wolf; Pietro Perona; David J Anderson
Journal:  Neuron       Date:  2009-11-25       Impact factor: 17.173

View more
  6 in total

1.  Phenotypic Landscape of Schizophrenia-Associated Genes Defines Candidates and Their Shared Functions.

Authors:  Summer B Thyme; Lindsey M Pieper; Eric H Li; Shristi Pandey; Yiqun Wang; Nathan S Morris; Carrie Sha; Joo Won Choi; Kristian J Herrera; Edward R Soucy; Steve Zimmerman; Owen Randlett; Joel Greenwood; Steven A McCarroll; Alexander F Schier
Journal:  Cell       Date:  2019-03-28       Impact factor: 41.582

Review 2.  Zebrafish models in neuropsychopharmacology and CNS drug discovery.

Authors:  Kanza M Khan; Adam D Collier; Darya A Meshalkina; Elana V Kysil; Sergey L Khatsko; Tatyana Kolesnikova; Yury Yu Morzherin; Jason E Warnick; Allan V Kalueff; David J Echevarria
Journal:  Br J Pharmacol       Date:  2017-04-05       Impact factor: 8.739

Review 3.  Utilizing Zebrafish Visual Behaviors in Drug Screening for Retinal Degeneration.

Authors:  Logan Ganzen; Prahatha Venkatraman; Chi Pui Pang; Yuk Fai Leung; Mingzhi Zhang
Journal:  Int J Mol Sci       Date:  2017-06-02       Impact factor: 5.923

4.  Opioid-free sedation for atlantoaxial cerebrospinal fluid collection in adult horses.

Authors:  Gemma Cock; Zachary Blakeney; Jorge A Hernandez; Sally DeNotta
Journal:  J Vet Intern Med       Date:  2022-05-31       Impact factor: 3.175

5.  Automatic multiple zebrafish larvae tracking in unconstrained microscopic video conditions.

Authors:  Xiaoying Wang; Eva Cheng; Ian S Burnett; Yushi Huang; Donald Wlodkowic
Journal:  Sci Rep       Date:  2017-12-14       Impact factor: 4.379

Review 6.  Cell and small animal models for phenotypic drug discovery.

Authors:  Mihaly Szabo; Sara Svensson Akusjärvi; Ankur Saxena; Jianping Liu; Gayathri Chandrasekar; Satish S Kitambi
Journal:  Drug Des Devel Ther       Date:  2017-06-28       Impact factor: 4.162

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.