Literature DB >> 26237162

Comparative genomics of pectinacetylesterases: Insight on function and biology.

Amancio José de Souza1, Markus Pauly1.   

Abstract

Pectin acetylation influences the gelling ability of this important plant polysaccharide for the food industry. Plant apoplastic pectinacetylesterases (PAEs) play a key role in regulating the degree of pectin acetylation and modifying their expression thus represents one way to engineer plant polysaccharides for food applications. Identifying the major active enzymes within the PAE gene family will aid in our understanding of this biological phenomena as well as provide the tools for direct trait manipulation. Using comparative genomics we propose that there is a minimal set of 4 distinct PAEs in plants. Possible functional diversification of the PAE family in the grasses is also explored with the identification of 3 groups of PAE genes specific to grasses.

Entities:  

Keywords:  acetylation; cell walls; comparative genomics; pectin; pectinacetylesterases; phylogeny

Mesh:

Substances:

Year:  2015        PMID: 26237162      PMCID: PMC4883895          DOI: 10.1080/15592324.2015.1055434

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN: 1559-2316


  16 in total

Review 1.  Evolving views of pectin biosynthesis.

Authors:  Melani A Atmodjo; Zhangying Hao; Debra Mohnen
Journal:  Annu Rev Plant Biol       Date:  2013-03-01       Impact factor: 26.379

Review 2.  Hemicellulose biosynthesis.

Authors:  Markus Pauly; Sascha Gille; Lifeng Liu; Nasim Mansoori; Amancio de Souza; Alex Schultink; Guangyan Xiong
Journal:  Planta       Date:  2013-06-26       Impact factor: 4.116

3.  Acetylesterase-mediated deacetylation of pectin impairs cell elongation, pollen germination, and plant reproduction.

Authors:  Jin-Ying Gou; Lisa M Miller; Guichuan Hou; Xiao-Hong Yu; Xiao-Ya Chen; Chang-Jun Liu
Journal:  Plant Cell       Date:  2012-01-13       Impact factor: 11.277

4.  O-acetylation of Arabidopsis hemicellulose xyloglucan requires AXY4 or AXY4L, proteins with a TBL and DUF231 domain.

Authors:  Sascha Gille; Amancio de Souza; Guangyan Xiong; Monique Benz; Kun Cheng; Alex Schultink; Ida-Barbara Reca; Markus Pauly
Journal:  Plant Cell       Date:  2011-11-15       Impact factor: 11.277

5.  Jalview Version 2--a multiple sequence alignment editor and analysis workbench.

Authors:  Andrew M Waterhouse; James B Procter; David M A Martin; Michèle Clamp; Geoffrey J Barton
Journal:  Bioinformatics       Date:  2009-01-16       Impact factor: 6.937

6.  The identification of two arabinosyltransferases from tomato reveals functional equivalency of xyloglucan side chain substituents.

Authors:  Alex Schultink; Kun Cheng; Yong Bum Park; Daniel J Cosgrove; Markus Pauly
Journal:  Plant Physiol       Date:  2013-07-26       Impact factor: 8.340

7.  Okra pectin contains an unusual substitution of its rhamnosyl residues with acetyl and alpha-linked galactosyl groups.

Authors:  Nipaporn Sengkhamparn; Edwin J Bakx; René Verhoef; Henk A Schols; Tanaboon Sajjaanantakul; Alphons G J Voragen
Journal:  Carbohydr Res       Date:  2009-01-01       Impact factor: 2.104

8.  Deep sequencing of voodoo lily (Amorphophallus konjac): an approach to identify relevant genes involved in the synthesis of the hemicellulose glucomannan.

Authors:  Sascha Gille; Kun Cheng; Mary E Skinner; Aaron H Liepman; Curtis G Wilkerson; Markus Pauly
Journal:  Planta       Date:  2011-05-03       Impact factor: 4.116

9.  Phytozome: a comparative platform for green plant genomics.

Authors:  David M Goodstein; Shengqiang Shu; Russell Howson; Rochak Neupane; Richard D Hayes; Joni Fazo; Therese Mitros; William Dirks; Uffe Hellsten; Nicholas Putnam; Daniel S Rokhsar
Journal:  Nucleic Acids Res       Date:  2011-11-22       Impact factor: 16.971

10.  The carbohydrate-active enzymes database (CAZy) in 2013.

Authors:  Vincent Lombard; Hemalatha Golaconda Ramulu; Elodie Drula; Pedro M Coutinho; Bernard Henrissat
Journal:  Nucleic Acids Res       Date:  2013-11-21       Impact factor: 16.971

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  6 in total

1.  Inhibition of peroxidases and oxidoreductases is crucial for avoiding false-positive reactions in the localization of reactive oxygen species in intact barley root tips.

Authors:  Katarína Valentovičová; Loriana Demecsová; Ľubica Liptáková; Veronika Zelinová; Ladislav Tamás
Journal:  Planta       Date:  2022-02-16       Impact factor: 4.116

2.  Bioinformatics analysis of PAE family in Populus trichocarpa and responsiveness to carbon and nitrogen treatment.

Authors:  Chunpu Qu; Guanjun Liu; Caifeng Xu; Shuang Zhang; Juanfang Suo; Ruhui Chang; Xiuyue Xu; Zhiru Xu; Chuanping Yang
Journal:  3 Biotech       Date:  2021-07-13       Impact factor: 2.893

3.  Plant pectin acetylesterase structure and function: new insights from bioinformatic analysis.

Authors:  Florian Philippe; Jérôme Pelloux; Catherine Rayon
Journal:  BMC Genomics       Date:  2017-06-08       Impact factor: 3.969

4.  Systematic Analysis and Functional Validation of Citrus Pectin Acetylesterases (CsPAEs) Reveals that CsPAE2 Negatively Regulates Citrus Bacterial Canker Development.

Authors:  Qiang Li; Jia Fu; Xiujuan Qin; Wen Yang; Jingjing Qi; Zhengguo Li; Shanchun Chen; Yongrui He
Journal:  Int J Mol Sci       Date:  2020-12-11       Impact factor: 5.923

Review 5.  The Multifaceted Role of Pectin Methylesterase Inhibitors (PMEIs).

Authors:  Alexandra Wormit; Björn Usadel
Journal:  Int J Mol Sci       Date:  2018-09-21       Impact factor: 5.923

Review 6.  Building a Flower: The Influence of Cell Wall Composition on Flower Development and Reproduction.

Authors:  José Erik Cruz-Valderrama; Judith Jazmin Bernal-Gallardo; Humberto Herrera-Ubaldo; Stefan de Folter
Journal:  Genes (Basel)       Date:  2021-06-26       Impact factor: 4.096

  6 in total

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