Literature DB >> 26235082

AlzPathway, an Updated Map of Curated Signaling Pathways: Towards Deciphering Alzheimer's Disease Pathogenesis.

Soichi Ogishima1, Satoshi Mizuno, Masataka Kikuchi, Akinori Miyashita, Ryozo Kuwano, Hiroshi Tanaka, Jun Nakaya.   

Abstract

Alzheimer's disease (AD) is a complex neurodegenerative disorder in which loss of neurons and synaptic function causes dementia in the elderly. To clarify AD pathogenesis and develop drugs for AD, thousands of studies have elucidated signaling pathways involved. However, knowledge of AD signaling pathways has not been compiled as a pathway map. In this chapter, we introduce the manual construction of a pathway map in AD which we call "AlzPathway", that comprehensively catalogs signaling pathways in the field of AD. We have collected and manually curated over 100 review articles related to AD, and have built the AD pathway map. AlzPathway is currently composed of thousands of molecules and reactions in neurons, brain blood barrier, presynaptic, postsynaptic, astrocyte, and microglial cells, with their cellular localizations. AlzPathway provides a systems-biology platform of comprehensive AD signaling and related pathways which is expected to contribute to clarification of AD pathogenesis and AD drug development.

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Mesh:

Year:  2016        PMID: 26235082     DOI: 10.1007/978-1-4939-2627-5_25

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  6 in total

1.  NaviCom: a web application to create interactive molecular network portraits using multi-level omics data.

Authors:  Mathurin Dorel; Eric Viara; Emmanuel Barillot; Andrei Zinovyev; Inna Kuperstein
Journal:  Database (Oxford)       Date:  2017-01-01       Impact factor: 3.451

2.  A computational framework for complex disease stratification from multiple large-scale datasets.

Authors:  Bertrand De Meulder; Diane Lefaudeux; Aruna T Bansal; Alexander Mazein; Amphun Chaiboonchoe; Hassan Ahmed; Irina Balaur; Mansoor Saqi; Johann Pellet; Stéphane Ballereau; Nathanaël Lemonnier; Kai Sun; Ioannis Pandis; Xian Yang; Manohara Batuwitage; Kosmas Kretsos; Jonathan van Eyll; Alun Bedding; Timothy Davison; Paul Dodson; Christopher Larminie; Anthony Postle; Julie Corfield; Ratko Djukanovic; Kian Fan Chung; Ian M Adcock; Yi-Ke Guo; Peter J Sterk; Alexander Manta; Anthony Rowe; Frédéric Baribaud; Charles Auffray
Journal:  BMC Syst Biol       Date:  2018-05-29

3.  Automated inference of Boolean models from molecular interaction maps using CaSQ.

Authors:  Sara Sadat Aghamiri; Vidisha Singh; Aurélien Naldi; Tomáš Helikar; Sylvain Soliman; Anna Niarakis
Journal:  Bioinformatics       Date:  2020-08-15       Impact factor: 6.937

Review 4.  Data science in neurodegenerative disease: its capabilities, limitations, and perspectives.

Authors:  Sepehr Golriz Khatami; Sarah Mubeen; Martin Hofmann-Apitius
Journal:  Curr Opin Neurol       Date:  2020-04       Impact factor: 6.283

5.  Discovery and validation of plasma proteomic biomarkers relating to brain amyloid burden by SOMAscan assay.

Authors:  Liu Shi; Sarah Westwood; Alison L Baird; Laura Winchester; Valerija Dobricic; Fabian Kilpert; Shengjun Hong; Andre Franke; Abdul Hye; Nicholas J Ashton; Angharad R Morgan; Isabelle Bos; Stephanie J B Vos; Noel J Buckley; Mara Ten Kate; Philip Scheltens; Rik Vandenberghe; Silvy Gabel; Karen Meersmans; Sebastiaan Engelborghs; Ellen E De Roeck; Kristel Sleegers; Giovanni B Frisoni; Olivier Blin; Jill C Richardson; Régis Bordet; José L Molinuevo; Lorena Rami; Anders Wallin; Petronella Kettunen; Magda Tsolaki; Frans Verhey; Alberto Lleó; Daniel Alcolea; Julius Popp; Gwendoline Peyratout; Pablo Martinez-Lage; Mikel Tainta; Peter Johannsen; Charlotte E Teunissen; Yvonne Freund-Levi; Lutz Frölich; Cristina Legido-Quigley; Frederik Barkhof; Kaj Blennow; Henrik Zetterberg; Susan Baker; B Paul Morgan; Johannes Streffer; Pieter Jelle Visser; Lars Bertram; Simon Lovestone; Alejo J Nevado-Holgado
Journal:  Alzheimers Dement       Date:  2019-09-05       Impact factor: 21.566

Review 6.  A comparison of mechanistic signaling pathway activity analysis methods.

Authors:  Alicia Amadoz; Marta R Hidalgo; Cankut Çubuk; José Carbonell-Caballero; Joaquín Dopazo
Journal:  Brief Bioinform       Date:  2019-09-27       Impact factor: 11.622

  6 in total

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