Literature DB >> 26235057

There and back again: Iterating between population-based modeling and experiments reveals surprising regulation of calcium transients in rat cardiac myocytes.

Ryan A Devenyi1, Eric A Sobie2.   

Abstract

While many ion channels and transporters involved in cardiac cellular physiology have been identified and described, the relative importance of each in determining emergent cellular behaviors remains unclear. Here we address this issue with a novel approach that combines population-based mathematical modeling with experimental tests to systematically quantify the relative contributions of different ion channels and transporters to the amplitude of the cellular Ca(2+) transient. Sensitivity analysis of a mathematical model of the rat ventricular cardiomyocyte quantified the response of cell behaviors to changes in the level of each ion channel and transporter, and experimental tests of these predictions were performed to validate or invalidate the predictions. The model analysis found that partial inhibition of the transient outward current in rat ventricular epicardial myocytes was predicted to have a greater impact on Ca(2+) transient amplitude than either: (1) inhibition of the same current in endocardial myocytes, or (2) comparable inhibition of the sarco/endoplasmic reticulum Ca(2+) ATPase (SERCA). Experimental tests confirmed the model predictions qualitatively but showed some quantitative disagreement. This guided us to recalibrate the model by adjusting the relative importance of several Ca(2+) fluxes, thereby improving the consistency with experimental data and producing a more predictive model. Analysis of human cardiomyocyte models suggests that the relative importance of outward currents to Ca(2+) transporters is generalizable to human atrial cardiomyocytes, but not ventricular cardiomyocytes. Overall, our novel approach of combining population-based mathematical modeling with experimental tests has yielded new insight into the relative importance of different determinants of cell behavior.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Cardiac Ca(2+) transients; Cardiac myocytes; Cardiac potassium channels; Parameter sensitivity analysis; Sarcoplasmic/endoplasmic-reticulum Ca(2+) ATPase

Mesh:

Substances:

Year:  2015        PMID: 26235057      PMCID: PMC4733425          DOI: 10.1016/j.yjmcc.2015.07.016

Source DB:  PubMed          Journal:  J Mol Cell Cardiol        ISSN: 0022-2828            Impact factor:   5.000


  64 in total

1.  Relationship between transient outward K+ current and Ca2+ influx in rat cardiac myocytes of endo- and epicardial origin.

Authors:  T Volk; T H Nguyen; J H Schultz; H Ehmke
Journal:  J Physiol       Date:  1999-09-15       Impact factor: 5.182

2.  A simple numerical model of calcium spark formation and detection in cardiac myocytes.

Authors:  G D Smith; J E Keizer; M D Stern; W J Lederer; H Cheng
Journal:  Biophys J       Date:  1998-07       Impact factor: 4.033

3.  A novel, rapid and reversible method to measure Ca buffering and time-course of total sarcoplasmic reticulum Ca content in cardiac ventricular myocytes.

Authors:  A W Trafford; M E Díaz; D A Eisner
Journal:  Pflugers Arch       Date:  1999-02       Impact factor: 3.657

4.  Two components of cardiac delayed rectifier K+ current. Differential sensitivity to block by class III antiarrhythmic agents.

Authors:  M C Sanguinetti; N K Jurkiewicz
Journal:  J Gen Physiol       Date:  1990-07       Impact factor: 4.086

5.  Comparison of subsarcolemmal and bulk calcium concentration during spontaneous calcium release in rat ventricular myocytes.

Authors:  A W Trafford; M E Díaz; S C O'Neill; D A Eisner
Journal:  J Physiol       Date:  1995-11-01       Impact factor: 5.182

6.  Heterogeneity of action potential waveforms and potassium currents in rat ventricle.

Authors:  R B Clark; R A Bouchard; E Salinas-Stefanon; J Sanchez-Chapula; W R Giles
Journal:  Cardiovasc Res       Date:  1993-10       Impact factor: 10.787

7.  Sustained depolarization-induced outward current in human atrial myocytes. Evidence for a novel delayed rectifier K+ current similar to Kv1.5 cloned channel currents.

Authors:  Z Wang; B Fermini; S Nattel
Journal:  Circ Res       Date:  1993-12       Impact factor: 17.367

8.  Ionic currents and action potentials in rabbit, rat, and guinea pig ventricular myocytes.

Authors:  A Varró; D A Lathrop; S B Hester; P P Nánási; J G Papp
Journal:  Basic Res Cardiol       Date:  1993 Mar-Apr       Impact factor: 17.165

9.  Characterization of 4-aminopyridine block of the transient outward K+ current in adult rat ventricular myocytes.

Authors:  N A Castle; M T Slawsky
Journal:  J Pharmacol Exp Ther       Date:  1993-06       Impact factor: 4.030

10.  Characterization of two distinct depolarization-activated K+ currents in isolated adult rat ventricular myocytes.

Authors:  M Apkon; J M Nerbonne
Journal:  J Gen Physiol       Date:  1991-05       Impact factor: 4.086

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  22 in total

1.  Afterdepolarizations and abnormal calcium handling in atrial myocytes with modulated SERCA uptake: a sensitivity analysis of calcium handling channels.

Authors:  Andy C Y Lo; Jieyun Bai; Patrick A Gladding; Vadim V Fedorov; Jichao Zhao
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2020-05-25       Impact factor: 4.226

2.  Differential roles of two delayed rectifier potassium currents in regulation of ventricular action potential duration and arrhythmia susceptibility.

Authors:  Ryan A Devenyi; Francis A Ortega; Willemijn Groenendaal; Trine Krogh-Madsen; David J Christini; Eric A Sobie
Journal:  J Physiol       Date:  2016-12-28       Impact factor: 5.182

3.  I love it when a plan comes together: Insight gained through convergence of competing mathematical models.

Authors:  Jingqi Q X Gong; Jaehee V Shim; Elisa Núñez-Acosta; Eric A Sobie
Journal:  J Mol Cell Cardiol       Date:  2016-11-30       Impact factor: 5.000

4.  Slow Delayed Rectifier Current Protects Ventricular Myocytes From Arrhythmic Dynamics Across Multiple Species: A Computational Study.

Authors:  Meera Varshneya; Ryan A Devenyi; Eric A Sobie
Journal:  Circ Arrhythm Electrophysiol       Date:  2018-10

5.  Computational modeling of amylin-induced calcium dysregulation in rat ventricular cardiomyocytes.

Authors:  Bradley D Stewart; Caitlin E Scott; Thomas P McCoy; Guo Yin; Florin Despa; Sanda Despa; Peter M Kekenes-Huskey
Journal:  Cell Calcium       Date:  2017-12-08       Impact factor: 6.817

6.  The Ca2+ transient as a feedback sensor controlling cardiomyocyte ionic conductances in mouse populations.

Authors:  Colin M Rees; Jun-Hai Yang; Marc Santolini; Aldons J Lusis; James N Weiss; Alain Karma
Journal:  Elife       Date:  2018-09-25       Impact factor: 8.140

7.  Quantitative analysis of variability in an integrated model of human ventricular electrophysiology and β-adrenergic signaling.

Authors:  Jingqi Q X Gong; Monica E Susilo; Anna Sher; Cynthia J Musante; Eric A Sobie
Journal:  J Mol Cell Cardiol       Date:  2020-04-21       Impact factor: 5.000

8.  Revealing kinetics and state-dependent binding properties of IKur-targeting drugs that maximize atrial fibrillation selectivity.

Authors:  Nicholas Ellinwood; Dobromir Dobrev; Stefano Morotti; Eleonora Grandi
Journal:  Chaos       Date:  2017-09       Impact factor: 3.642

9.  Gastrodin Pretreatment Impact on Sarcoplasmic Reticulum Calcium Transport ATPase (SERCA) and Calcium Phosphate (PLB) Expression in Rats with Myocardial Ischemia Reperfusion.

Authors:  Yufen Li; Xiaomei Wang; Changli Lou
Journal:  Med Sci Monit       Date:  2016-09-19

10.  Variability in cardiac electrophysiology: Using experimentally-calibrated populations of models to move beyond the single virtual physiological human paradigm.

Authors:  Anna Muszkiewicz; Oliver J Britton; Philip Gemmell; Elisa Passini; Carlos Sánchez; Xin Zhou; Annamaria Carusi; T Alexander Quinn; Kevin Burrage; Alfonso Bueno-Orovio; Blanca Rodriguez
Journal:  Prog Biophys Mol Biol       Date:  2015-12-14       Impact factor: 3.667

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