Literature DB >> 26231889

Lipidomic data analysis: tutorial, practical guidelines and applications.

Antonio Checa1, Carmen Bedia2, Joaquim Jaumot3.   

Abstract

Lipids are a broad group of biomolecules involved in diverse critical biological roles such as cellular membrane structure, energy storage or cell signaling and homeostasis. Lipidomics is the -omics science that pursues the comprehensive characterization of lipids present in a biological sample. Different analytical strategies such as nuclear magnetic resonance or mass spectrometry with or without previous chromatographic separation are currently used to analyze the lipid composition of a sample. However, current analytical techniques provide a vast amount of data which complicates the interpretation of results without the use of advanced data analysis tools. The choice of the appropriate chemometric method is essential to extract valuable information from the crude data as well as to interpret the lipidomic results in the biological context studied. The present work summarizes the diverse methods of analysis than can be used to study lipidomic data, from statistical inference tests to more sophisticated multivariate analysis methods. In addition to the theoretical description of the methods, application of various methods to a particular lipidomic data set as well as literature examples are presented.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Chemometrics; Classification; Data analysis; Exploration; Lipidomics; Statistics

Mesh:

Substances:

Year:  2015        PMID: 26231889     DOI: 10.1016/j.aca.2015.02.068

Source DB:  PubMed          Journal:  Anal Chim Acta        ISSN: 0003-2670            Impact factor:   6.558


  23 in total

1.  Phospholipidomic Studies in Human Cornea From Climatic Droplet Keratopathy.

Authors:  Maria Fernanda Suarez; Maria Carmen Piqueras; Leandro Correa; Evangelina Esposito; Maria Fernanda Barros; Sanjoy K Bhattacharya; Julio A Urrets-Zavalia; Horacio M Serra
Journal:  J Cell Biochem       Date:  2017-05-23       Impact factor: 4.429

2.  Analysis of the uterine lumen in fertility-classified heifers: I. Glucose, prostaglandins, and lipids†.

Authors:  Joao G N Moraes; Susanta K Behura; Thomas W Geary; Thomas E Spencer
Journal:  Biol Reprod       Date:  2020-02-14       Impact factor: 4.285

3.  Metabolic Reprogramming by Folate Restriction Leads to a Less Aggressive Cancer Phenotype.

Authors:  Zahra Ashkavand; Ciara O'Flanagan; Mirko Hennig; Xiuxia Du; Stephen D Hursting; Sergey A Krupenko
Journal:  Mol Cancer Res       Date:  2017-02       Impact factor: 5.852

4.  Mass Spectrometry-Based Shotgun Lipidomics for Cancer Research.

Authors:  Jianing Wang; Chunyan Wang; Xianlin Han
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

5.  Integrated Metabolomics and Lipidomics Reveal High Accumulation of Glycerophospholipids in Human Astrocytes under the Lipotoxic Effect of Palmitic Acid and Tibolone Protection.

Authors:  Ricardo Cabezas; Cynthia Martin-Jiménez; Martha Zuluaga; Andrés Pinzón; George E Barreto; Janneth González
Journal:  Int J Mol Sci       Date:  2022-02-23       Impact factor: 5.923

6.  Applying a vernix caseosa based formulation accelerates skin barrier repair by modulating lipid biosynthesis.

Authors:  Walter A Boiten; Tineke Berkers; Samira Absalah; Jeroen van Smeden; Adriana P M Lavrijsen; Joke A Bouwstra
Journal:  J Lipid Res       Date:  2017-12-07       Impact factor: 5.922

Review 7.  Lipidomics: Techniques, Applications, and Outcomes Related to Biomedical Sciences.

Authors:  Kui Yang; Xianlin Han
Journal:  Trends Biochem Sci       Date:  2016-09-20       Impact factor: 13.807

8.  Proteomics Approach of Rapamycin Anti-Tumoral Effect on Primary and Metastatic Canine Mammary Tumor Cells In Vitro.

Authors:  Patrícia F Lainetti; Antonio F Leis-Filho; Priscila E Kobayashi; Laíza S de Camargo; Renee Laufer-Amorim; Carlos E Fonseca-Alves; Fabiana F Souza
Journal:  Molecules       Date:  2021-02-25       Impact factor: 4.411

9.  Development and assessment of a lysophospholipid-based deep learning model to discriminate geographical origins of white rice.

Authors:  Nguyen Phuoc Long; Dong Kyu Lim; Changyeun Mo; Giyoung Kim; Sung Won Kwon
Journal:  Sci Rep       Date:  2017-08-17       Impact factor: 4.379

Review 10.  Lipidomic analysis of epidermal lipids: a tool to predict progression of inflammatory skin disease in humans.

Authors:  Shan Li; Gitali Ganguli-Indra; Arup K Indra
Journal:  Expert Rev Proteomics       Date:  2016-05       Impact factor: 3.940

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