| Literature DB >> 26230946 |
Guillermo Gervasini1, Montserrat García-Cerrada1, Eliecer Coto2, Esther Vergara3, Guadalupe García-Pino4, Raul Alvarado4, Maria Jesús Fernández-Cavada3, Beatriz Suárez-Álvarez5, Sergio Barroso4, Emilio Doblaré3, Carmen Díaz-Corte6, Carlos López-Larrea7, Juan Jose Cubero4.
Abstract
BACKGROUND ANDEntities:
Mesh:
Substances:
Year: 2015 PMID: 26230946 PMCID: PMC4521874 DOI: 10.1371/journal.pone.0133563
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Location, consequence and context sequence of the three EPHX2 SNPs analyzed in this study, as provided by the manufacturer of the TaqMan SNP genotyping assays (Life Technologies, Maryland, USA).
| SNP | Transition | Aminoacid change | Location | Context sequence [VIC/FAM] |
|---|---|---|---|---|
| rs41507953 | A/G | K55R | Chr.8: 27358505 on NCBI Build 37 | GAGGGTGCCACTACCCGGCTTATGA[A/G]AGGAGAGATCACACTTTCCCAGGTG |
| rs751141 | A/G | R287Q | Chr.8: 27373865 on NCBI Build 37 | CCTGCTCTGGCCCAGGCAGGTTACC[A/G]GGTCCTAGCTATGGACATGAAAGGC |
| rs1042032 | A/G | None (3’-UTR) | Chr.8: 27402074 on NCBI Build 37 | TGTGCCCACGCTCAGCAGGTGTGCC[A/G]TCCTTCCACCTGCTGGGGCACCATT |
UTR, untranslated region.
Clinical and demographic parameters of the study population.
Four time-points within a one-year follow-up were considered.
| Time-point | One week | One month | 5 months | One year | |
|---|---|---|---|---|---|
| Creatinine serum concentration (mg/dL) | 2.48 ± 2.07 | 1.69 ± 0.93 | 1.49 ± 0.72 | 1.38 ± 0.62 | |
| eGFR (ml min-1 1.73 m-2) | 33.29 ± 14.10 | 36.90 ± 13.73 | 41.60 ± 13.98 | 44.02 ± 14.83 | |
| Recipients on tacrolimus | 208 (80.3) | ||||
| Dose (mg/kg) | 0.14 ± 0.07 | 0.11 ± 0.06 | 0.08 ± 0.04 | 0.06 ± 0.06 | |
| Dose-normalized Tac blood concentration (ng/ml per mg/day per kg) | 111.0 ± 80.1 | 121.1 ± 66.7 | 162.5± 77.0 | 176.3 ± 110.1 | |
| Recipients on cyclosporine | 51 (19.7) | ||||
| Dose (mg/kg) | 8.0 ± 1.9 | 6.3 ± 1.6 | 4.5 ±1.7 | 3.5 ± 1.1 | |
| Dose-normalized CsA blood concentration (ng/ml per mg/day per kg) | 42.32 ± 20.13 | 53.91 ± 22.48 | 51.04 ± 17.96 | 50.16 ± 18.98 | |
| Recipients sex (male/female) | 158 (61.0) / 101 (39.0) | ||||
| Recipients age (years) | 48.18 ± 14.31 | ||||
| Type of dialysis (hemodialysis/peritoneal) | 174 (67.2)/85 (32.8) | ||||
| Duration of dialysis before transplantation (months) | 38.16 ± 30.09 | ||||
| Donor age (years) | 47.63 ± 17.51 | ||||
| Number of transplants (first/second/third) | 246 (95.0)/11 (4.2)/1 (0.8) | ||||
| Cold ischemia time (hours) | 16.22 ± 5.01 | ||||
| Peak cytotoxic PRA ≥ 50% | 20 (7.72) | ||||
| HLA mismatch | |||||
| 0–2 | 69 (26.64) | ||||
| 3–4 | 162 (62.54) | ||||
| 5–6 | 28 (10.81) |
Data are shown as number (percentage) or mean ± standard deviation.
Genotypic and allelic frequencies in donors and renal transplant recipients.
| Recipients | Donors | |||||
|---|---|---|---|---|---|---|
| Polymorphism | N | % | N | % | MAF | |
|
|
| 215 | 83.0 | 133 | 72.7 | 0.114 |
|
| 40 | 15.4 | 47 | 25.7 | ||
|
| 4 | 1.5 | 3 | 1.6 | ||
|
|
| 223 | 86.1 | 153 | 83.6 | 0.076 |
|
| 36 | 13.9 | 29 | 15.8 | ||
|
| 0 | 0.0 | 1 | 0.5 | ||
|
|
| 153 | 59.1 | 81 | 44.3 | 0.273 |
|
| 85 | 32.8 | 90 | 49.2 | ||
|
| 21 | 8.1 | 12 | 6.6 | ||
N, number of subjects; MAF, minor allele frequency.
Fig 1Effect of the EPHX2 3’ UTR A/G polymorphism (rs1042032) of the recipient on the estimated glomerular filtration rate throughout the one-year follow-up.
*p<0.05 vs. AA/AG group.
Fig 2Effect of the EPHX2 3’ UTR A/G polymorphism (rs1042032) of the recipient on serum creatinine concentrations throughout the one-year follow-up.
*p<0.05 vs. AA/AG group.
Odds ratios (OR) with 95% confidence intervals (CI) for the association of EPHX2 SNPs with acute rejection in renal transplant recipients.
| Recipients | Donors | ||||
|---|---|---|---|---|---|
| Polymorphism | OR (CI) | p | OR (CI) | p | |
|
|
| Ref. | 0.83 | Ref. | 0.43 |
|
| 1.23 (0.35–4.28) | 1.53 (0.49–4.79) | |||
|
| NC | 6.61 (0.28–156.51) | |||
|
|
| Ref. | 0.38 | Ref. | 0.48 |
|
| 1.93 (0.46–8.01) | 1.77 (0.35–7.24) | |||
|
| NC | NC | |||
|
|
| Ref. | 0.04 | Ref. | 0.11 |
|
| 0.64 (0.15–2.67) | 0.76 (0.25–2.33) | |||
|
| 5.45 (1.09–27.21) | 4.80 (0.96–26.54) | |||
NC, non-calculable.
Effect of EPHX2 haplotypes both in donors and recipients on the risk for acute rejection.
| Haplotype | Frequency | rs41507953 | rs751141 | rs1042032 | OR (CI) | p |
|---|---|---|---|---|---|---|
| Recipients | ||||||
|
| 0.732 | wt | wt | wt | Reference | |
|
| 0.114 | wt | wt | M | 2.28 (0.92–5.67) | 0.08 |
|
| 0.082 | M | wt | M | 0.24 (0.01–4.14) | 0.33 |
|
| 0.065 | wt | M | M | 3.09 (0.76–12.52) | 0.12 |
|
| <0.01 | M | wt | wt | - | |
| Donors | ||||||
|
| 0.662 | wt | wt | wt | Reference | |
|
| 0.116 | wt | wt | M | 0.94 (0.26–3.37) | 0.93 |
|
| 0.077 | M | wt | M | 1.96 (0.53–7.29) | 0.32 |
|
| 0.137 | wt | M | M | 2.21 (0.81–6.00) | 0.12 |
|
| <0.01 | M | wt | wt | - |
wt, wild type allele. M, variant allele.