Literature DB >> 26230238

RNA-seq in Pulmonary Medicine: How Much Is Enough?

Mondira Ray1, William Horne1, Jeremy P McAleer1, David M Ricks1, James L Kreindler2, Michael S Fitzsimons3, Patricia P Chan3, Giraldina Trevejo-Nunez1, Kong Chen1, Merritt Fajt1, Wei Chen1, Anuradha Ray1, Sally Wenzel1, Jay K Kolls1,4.   

Abstract

Mesh：

Year:  2015        PMID： 26230238      PMCID： PMC4584249          DOI： 10.1164/rccm.201403-0475LE

Source DB:  PubMed          Journal:  Am J Respir Crit Care Med        ISSN： 1073-449X            Impact factor:   21.405


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  8 in total

1.  Characterization of the severe asthma phenotype by the National Heart, Lung, and Blood Institute's Severe Asthma Research Program.

Authors:  Wendy C Moore; Eugene R Bleecker; Douglas Curran-Everett; Serpil C Erzurum; Bill T Ameredes; Leonard Bacharier; William J Calhoun; Mario Castro; Kian Fan Chung; Melissa P Clark; Raed A Dweik; Anne M Fitzpatrick; Benjamin Gaston; Mark Hew; Iftikhar Hussain; Nizar N Jarjour; Elliot Israel; Bruce D Levy; James R Murphy; Stephen P Peters; W Gerald Teague; Deborah A Meyers; William W Busse; Sally E Wenzel
Journal:  J Allergy Clin Immunol       Date:  2007-02       Impact factor: 10.793

2.  RNA-sequence analysis of human B-cells.

Authors:  Jonathan M Toung; Michael Morley; Mingyao Li; Vivian G Cheung
Journal:  Genome Res       Date:  2011-05-02       Impact factor: 9.043

Review 3.  Transcriptome analysis using next-generation sequencing.

Authors:  Kai-Oliver Mutz; Alexandra Heilkenbrinker; Maren Lönne; Johanna-Gabriela Walter; Frank Stahl
Journal:  Curr Opin Biotechnol       Date:  2012-09-25       Impact factor: 9.740

4.  Pathogenic simian immunodeficiency virus infection is associated with expansion of the enteric virome.

Authors:  Scott A Handley; Larissa B Thackray; Guoyan Zhao; Rachel Presti; Andrew D Miller; Lindsay Droit; Peter Abbink; Lori F Maxfield; Amal Kambal; Erning Duan; Kelly Stanley; Joshua Kramer; Sheila C Macri; Sallie R Permar; Joern E Schmitz; Keith Mansfield; Jason M Brenchley; Ronald S Veazey; Thaddeus S Stappenbeck; David Wang; Dan H Barouch; Herbert W Virgin
Journal:  Cell       Date:  2012-10-12       Impact factor: 41.582

5.  Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples.

Authors:  Günter P Wagner; Koryu Kin; Vincent J Lynch
Journal:  Theory Biosci       Date:  2012-08-08       Impact factor: 1.919

6.  Mast cell phenotype, location, and activation in severe asthma. Data from the Severe Asthma Research Program.

Authors:  Silvana Balzar; Merritt L Fajt; Suzy A A Comhair; Serpil C Erzurum; Eugene Bleecker; William W Busse; Mario Castro; Benjamin Gaston; Elliot Israel; Lawrence B Schwartz; Douglas Curran-Everett; Charity G Moore; Sally E Wenzel
Journal:  Am J Respir Crit Care Med       Date:  2010-09-02       Impact factor: 21.405

7.  Accurate quantification of transcriptome from RNA-Seq data by effective length normalization.

Authors:  Soohyun Lee; Chae Hwa Seo; Byungho Lim; Jin Ok Yang; Jeongsu Oh; Minjin Kim; Sooncheol Lee; Byungwook Lee; Changwon Kang; Sanghyuk Lee
Journal:  Nucleic Acids Res       Date:  2010-11-08       Impact factor: 16.971

8.  IL-17RA is required for CCL2 expression, macrophage recruitment, and emphysema in response to cigarette smoke.

Authors:  Kong Chen; Derek A Pociask; Jeremy P McAleer; Yvonne R Chan; John F Alcorn; James L Kreindler; Matthew R Keyser; Steven D Shapiro; A McGarry Houghton; Jay K Kolls; Mingquan Zheng
Journal:  PLoS One       Date:  2011-05-27       Impact factor: 3.240
  8 in total
  6 in total

1.  IL-17 Receptor Signaling in the Lung Epithelium Is Required for Mucosal Chemokine Gradients and Pulmonary Host Defense against K. pneumoniae.

Authors:  Kong Chen; Taylor Eddens; Giraldina Trevejo-Nunez; Emily E Way; Waleed Elsegeiny; David M Ricks; Abhishek V Garg; Carla J Erb; Meihua Bo; Ting Wang; Wei Chen; Janet S Lee; Sarah L Gaffen; Jay K Kolls
Journal:  Cell Host Microbe       Date:  2016-10-27       Impact factor: 21.023

2.  Therapeutic Role of Interleukin 22 in Experimental Intra-abdominal Klebsiella pneumoniae Infection in Mice.

Authors:  Mingquan Zheng; William Horne; Jeremy P McAleer; Derek Pociask; Taylor Eddens; Misty Good; Bin Gao; Jay K Kolls
Journal:  Infect Immun       Date:  2016-01-04       Impact factor: 3.441

3.  β-Agonist exposure preferentially impacts lung macrophage cyclic AMP-related gene expression in asthma and asthma COPD overlap syndrome.

Authors:  Kaveh Moghbeli; Eleanor Valenzi; Rachel Naramore; John Charles Sembrat; Kong Chen; Mauricio M Rojas; Sally E Wenzel; Robert Lafyatis; Brian Modena; Nathaniel M Weathington
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2021-09-08       Impact factor: 5.464

4.  Antiinflammatory effects of bromodomain and extraterminal domain inhibition in cystic fibrosis lung inflammation.

Authors:  Kong Chen; Brian T Campfield; Sally E Wenzel; Jeremy P McAleer; James L Kreindler; Geoffrey Kurland; Radha Gopal; Ting Wang; Wei Chen; Taylor Eddens; Kathleen M Quinn; Mike M Myerburg; William T Horne; Jose M Lora; Brian K Albrecht; Joseph M Pilewski; Jay K Kolls
Journal:  JCI Insight       Date:  2016-07-21

5.  Type-1 immunity and endogenous immune regulators predominate in the airway transcriptome during chronic lung allograft dysfunction.

Authors:  Carlo J Iasella; Aki Hoji; Iulia Popescu; Jianxin Wei; Mark E Snyder; Yingze Zhang; Wei Xu; Vera Iouchmanov; Ritchie Koshy; Mark Brown; Monica Fung; Charles Langelier; Elizabeth A Lendermon; Daniel Dugger; Rupal Shah; Joyce Lee; Bruce Johnson; Jeffrey Golden; Lorriana E Leard; Mary Ellen Kleinhenz; Silpa Kilaru; Steven R Hays; Jonathan P Singer; Pablo G Sanchez; Matthew R Morrell; Joseph M Pilewski; John R Greenland; Kong Chen; John F McDyer
Journal:  Am J Transplant       Date:  2020-11-20       Impact factor: 9.369

6.  Electrokinetic identification of ribonucleotide monophosphates (rNMPs) using thermoplastic nanochannels.

Authors:  Charuni A Amarasekara; Chathurika Rathnayaka; Uditha S Athapattu; Lulu Zhang; Junseo Choi; Sunggook Park; Aaron C Nagel; Steven A Soper
Journal:  J Chromatogr A       Date:  2021-01-08       Impact factor: 4.759
  6 in total

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