Literature DB >> 26226626

Improving the Catalytic Performance of an Artificial Metalloenzyme by Computational Design.

Tillmann Heinisch1, Michela Pellizzoni1, Marc Dürrenberger1, Christine E Tinberg2, Valentin Köhler1, Juliane Klehr1, Daniel Häussinger1, David Baker2,3, Thomas R Ward1.   

Abstract

Artifical metalloenzymes combine the reactivity of small molecule catalysts with the selectivity of enzymes, and new methods are required to tune the catalytic properties of these systems for an application of interest. Structure-based computational design could help to identify amino acid mutations leading to improved catalytic activity and enantioselectivity. Here we describe the application of Rosetta Design for the genetic optimization of an artificial transfer hydrogenase (ATHase hereafter), [(η(5)-Cp*)Ir(pico)Cl] ⊂ WT hCA II (Cp* = Me5C5(-)), for the asymmetric reduction of a cyclic imine, the precursor of salsolsidine. Based on a crystal structure of the ATHase, computational design afforded four hCAII variants with protein backbone-stabilizing and hydrophobic cofactor-embedding mutations. In dansylamide-competition assays, these designs showed 46-64-fold improved affinity for the iridium pianostool complex [(η(5)-Cp*)Ir(pico)Cl]. Gratifyingly, the new designs yielded a significant improvement in both activity and enantioselectivity (from 70% ee (WT hCA II) to up to 92% ee and a 4-fold increase in total turnover number) for the production of (S)-salsolidine. Introducing additional hydrophobicity in the Cp*-moiety of the Ir-catalyst provided by adding a propyl substituent on the Cp* moiety yields the most (S)-selective (96% ee) ATHase reported to date. X-ray structural data indicate that the high enantioselectivity results from embedding the piano stool moiety within the protein, consistent with the computational model.

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Year:  2015        PMID: 26226626     DOI: 10.1021/jacs.5b06622

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  10 in total

1.  Ir(III)-Based Agents for Monitoring the Cytochrome P450 3A4 Active Site Occupancy.

Authors:  Madeline Denison; Sean J Steinke; Aliza Majeed; Claudia Turro; Thomas A Kocarek; Irina F Sevrioukova; Jeremy J Kodanko
Journal:  Inorg Chem       Date:  2022-08-22       Impact factor: 5.436

Review 2.  Computational approaches for de novo design and redesign of metal-binding sites on proteins.

Authors:  Gunseli Bayram Akcapinar; Osman Ugur Sezerman
Journal:  Biosci Rep       Date:  2017-03-27       Impact factor: 3.840

3.  Tailored oxido-vanadium(V) cage complexes for selective sulfoxidation in confined spaces.

Authors:  Dawei Zhang; Kelsey Jamieson; Laure Guy; Guohua Gao; Jean-Pierre Dutasta; Alexandre Martinez
Journal:  Chem Sci       Date:  2016-09-05       Impact factor: 9.825

4.  Computer-aided biochemical programming of synthetic microreactors as diagnostic devices.

Authors:  Alexis Courbet; Patrick Amar; François Fages; Eric Renard; Franck Molina
Journal:  Mol Syst Biol       Date:  2018-04-26       Impact factor: 11.429

5.  Design of an enantioselective artificial metallo-hydratase enzyme containing an unnatural metal-binding amino acid.

Authors:  Ivana Drienovská; Lur Alonso-Cotchico; Pietro Vidossich; Agustí Lledós; Jean-Didier Maréchal; Gerard Roelfes
Journal:  Chem Sci       Date:  2017-09-04       Impact factor: 9.825

Review 6.  Artificial Metalloenzymes: Challenges and Opportunities.

Authors:  Holly J Davis; Thomas R Ward
Journal:  ACS Cent Sci       Date:  2019-07-16       Impact factor: 14.553

Review 7.  Unlocking the therapeutic potential of artificial metalloenzymes.

Authors:  Katsunori Tanaka; Kenward Vong
Journal:  Proc Jpn Acad Ser B Phys Biol Sci       Date:  2020       Impact factor: 3.493

8.  An enantioselective artificial Suzukiase based on the biotin-streptavidin technology.

Authors:  Anamitra Chatterjee; Hendrik Mallin; Juliane Klehr; Jaicy Vallapurackal; Aaron D Finke; Laura Vera; May Marsh; Thomas R Ward
Journal:  Chem Sci       Date:  2015-10-19       Impact factor: 9.825

9.  E. coli surface display of streptavidin for directed evolution of an allylic deallylase.

Authors:  Tillmann Heinisch; Fabian Schwizer; Brett Garabedian; Eszter Csibra; Markus Jeschek; Jaicy Vallapurackal; Vitor B Pinheiro; Philippe Marlière; Sven Panke; Thomas R Ward
Journal:  Chem Sci       Date:  2018-05-24       Impact factor: 9.825

10.  Breaking Symmetry: Engineering Single-Chain Dimeric Streptavidin as Host for Artificial Metalloenzymes.

Authors:  Shuke Wu; Yi Zhou; Johannes G Rebelein; Miriam Kuhn; Hendrik Mallin; Jingming Zhao; Nico V Igareta; Thomas R Ward
Journal:  J Am Chem Soc       Date:  2019-09-25       Impact factor: 15.419

  10 in total

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