Literature DB >> 26225466

Metal Stabilization of Collagen and de Novo Designed Mimetic Peptides.

Avanish S Parmar, Fei Xu, Douglas H Pike, Sandeep V Belure, Nida F Hasan, Kathryn E Drzewiecki, David I Shreiber, Vikas Nanda.   

Abstract

We explore the design of metal binding sites to modulate triple-helix stability of collagen and collagen-mimetic peptides. Globular proteins commonly utilize metals to connect tertiary structural elements that are well separated in sequence, constraining structure and enhancing stability. It is more challenging to engineer structural metals into fibrous protein scaffolds, which lack the extensive tertiary contacts seen in globular proteins. In the collagen triple helix, the structural adjacency of the carboxy-termini of the three chains makes this region an attractive target for introducing metal binding sites. We engineered His3 sites based on structural modeling constraints into a series of designed homotrimeric and heterotrimeric peptides, assessing the capacity of metal binding to improve stability and in the case of heterotrimers, affect specificity of assembly. Notable enhancements in stability for both homo- and heteromeric systems were observed upon addition of zinc(II) and several other metal ions only when all three histidine ligands were present. Metal binding affinities were consistent with the expected Irving-Williams series for imidazole. Unlike other metals tested, copper(II) also bound to peptides lacking histidine ligands. Acetylation of the peptide N-termini prevented copper binding, indicating proline backbone amide metal-coordination at this site. Copper similarly stabilized animal extracted Type I collagen in a metal-specific fashion, highlighting the potential importance of metal homeostasis within the extracellular matrix.

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Year:  2015        PMID: 26225466      PMCID: PMC5335877          DOI: 10.1021/acs.biochem.5b00502

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  77 in total

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Authors:  S Frank; R A Kammerer; D Mechling; T Schulthess; R Landwehr; J Bann; Y Guo; A Lustig; H P Bächinger; J Engel
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3.  Use of a non-rigid region in T4 lysozyme to design an adaptable metal-binding site.

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4.  Comparison of multiple Amber force fields and development of improved protein backbone parameters.

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5.  Crystal and molecular structure of a collagen-like peptide at 1.9 A resolution.

Authors:  J Bella; M Eaton; B Brodsky; H M Berman
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Journal:  J Mol Biol       Date:  1998-07-31       Impact factor: 5.469

7.  Effects of copper and cross-linking on the extracellular matrix of tissue-engineered arteries.

Authors:  Shannon L M Dahl; Robert B Rucker; Laura E Niklason
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8.  Helix signals in proteins.

Authors:  L G Presta; G D Rose
Journal:  Science       Date:  1988-06-17       Impact factor: 47.728

9.  Metal-mediated tandem coassembly of collagen peptides into banded microstructures.

Authors:  Marcos M Pires; David E Przybyla; Charles M Rubert Pérez; Jean Chmielewski
Journal:  J Am Chem Soc       Date:  2011-08-30       Impact factor: 15.419

10.  De novo design of a redox-active minimal rubredoxin mimic.

Authors:  Vikas Nanda; Michael M Rosenblatt; Artur Osyczka; Hidetoshi Kono; Zelleka Getahun; P Leslie Dutton; Jeffery G Saven; William F Degrado
Journal:  J Am Chem Soc       Date:  2005-04-27       Impact factor: 15.419

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  4 in total

1.  Tricine as a convenient scaffold for the synthesis of C-terminally branched collagen-model peptides.

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Review 2.  Recent trends in protein and peptide-based biomaterials for advanced drug delivery.

Authors:  Anastasia Varanko; Soumen Saha; Ashutosh Chilkoti
Journal:  Adv Drug Deliv Rev       Date:  2020-08-29       Impact factor: 15.470

3.  Reversible Covalent End-Capping of Collagen Model Peptides.

Authors:  Christoph Priem; Armin Geyer
Journal:  Chemistry       Date:  2019-10-17       Impact factor: 5.236

4.  Abnormal (Hydroxy)proline Deuterium Content Redefines Hydrogen Chemical Mass.

Authors:  Hassan Gharibi; Alexey L Chernobrovkin; Gunilla Eriksson; Amir Ata Saei; Zena Timmons; Andrew C Kitchener; Daniela C Kalthoff; Kerstin Lidén; Alexander A Makarov; Roman A Zubarev
Journal:  J Am Chem Soc       Date:  2022-02-02       Impact factor: 15.419

  4 in total

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