| Literature DB >> 26217954 |
Ryuji J Machida, Nancy Knowlton.
Abstract
Year: 2015 PMID: 26217954 PMCID: PMC4517788 DOI: 10.1371/journal.pone.0134314
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
List of the 18S and 28S ribosomal DNA primers designed in this study.
Primers 28S #6, 28S #8, and 28S #10 were modified from primers 22, 24, 26 [21], respectively. Primers ultimately selected for best overall efficacy are highlighted in bold.
| 18S ribosomal DNA | ||
| Forward primers (5' to 3') | Reverse complement primers (5' to 3') | Degeneracy |
|
| 2 | |
| #2: AACTTAAAGRAATTGACGGA |
| 2 |
| #3: GYGGTGCATGGCCGTTSKTRGTT | #3_RC: AACYAMSAACGGCCATGCACCRC | 16 |
| #4: ATAACAGGTCWGTRATGCCCTYMG | #4_RC: CKRAGGGCATYACWGACCTGTTAT | 16 |
| #5_RC: GTGTGYACAAAGGBCAGGGAC | 6 | |
| 28S ribosomal DNA | ||
| Forward primers (5' to 3') | Reverse complement primers (5' to 3') | Degeneracy |
| #1: CCGTCTTGAAACACGGDCYRAG | 6 | |
| #2: AGGGGCGAAAGACYAATCGAA | #2_RC: TTCGATTRGTCTTTCGCCCCT | 2 |
| #3: TTTTGGTAAGCAGAACTGGYG | #3_RC: CRCCAGTTCTGCTTACCAAAA | 2 |
| #4: GATCTYRGTGGYAGTAGCRAVT | #4_RC: ABTYGCTACTRCCACYRAGATC | 48 |
| #5: GGGAATCYRACTGTHTAATTAAA | #5_RC: TTTAATTADACAGTYRGATTCCC | 12 |
| #6: TGATTTCTGCCCAGTGCTYWGAAWGT | #6_RC: ACWTTCWRAGCACTGGGCAGAAATCA | 8 |
| #7: AACGGCGGRRGTAACTATGACTYT | #7_RC: ARAGTCATAGTTACYYCCGCCGTT | 8 |
|
| #8_RC: CTCAACAGGGTCTTCTTTCCC | 1 |
| #9: AAGACCCTGTTGAGYTTGACTCT | #9_RC: AGAGTCAARCTCAACAGGGTCTT | 2 |
| #10: GGGAGTTTGRCTGGGGCGG | #10_RC: CCGCCCCAGYCAAACTCCC | 2 |
|
| 3 |