Literature DB >> 26212101

Development of a rapid HRM genotyping method for detection of dog-derived Giardia lamblia.

Liping Tan1, Xingang Yu1, Auwalu Yusuf Abdullahi1, Sheng Wu1, Guochao Zheng1, Wei Hu1, Meiran Song1, Zhen Wang1, Biao Jiang1, Guoqing Li2.   

Abstract

Giardia lamblia is a zoonotic flagellate protozoan in the intestine of human and many mammals including dogs. To assess a threat of dog-derived G. lamblia to humans, the common dog-derived G. lamblia assemblages A, C, and D were genotyped by high-resolution melting (HRM) technology. According to β-giardin gene sequence, the qPCR-HRM primers BG5 and BG7 were designed. A series of experiments on the stability, sensitivity, and accuracy of the HRM method were also tested. Results showed that the primers BG5 and BG7 could distinguish among three assemblages A, C, and D, which Tm value differences were about 1 °C to each other. The melting curves of intra-assay reproducibility were almost coincided, and those of inter-assay reproducibility were much the same shape. The lowest detection concentration was about 5 × 10(-6)-ng/μL sample. The genotyping results from 21 G. lamblia samples by the HRM method were in complete accordance with sequencing results. It is concluded that the HRM genotyping method is rapid, stable, specific, highly sensitive, and suitable for clinical detection and molecular epidemiological survey of dog-derived G. lamblia.

Entities:  

Keywords:  Dog; Genotyping; Giardia lamblia; HRM; β-Giardin gene

Mesh:

Substances:

Year:  2015        PMID: 26212101     DOI: 10.1007/s00436-015-4636-3

Source DB:  PubMed          Journal:  Parasitol Res        ISSN: 0932-0113            Impact factor:   2.289


  25 in total

1.  Simultaneous mutation scanning and genotyping by high-resolution DNA melting analysis.

Authors:  Jesse Montgomery; Carl T Wittwer; Robert Palais; Luming Zhou
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

Review 2.  High-resolution melting analysis (HRMA): more than just sequence variant screening.

Authors:  Rolf H A M Vossen; Emmelien Aten; Anja Roos; Johan T den Dunnen
Journal:  Hum Mutat       Date:  2009-06       Impact factor: 4.878

Review 3.  High resolution melting applications for clinical laboratory medicine.

Authors:  Maria Erali; Karl V Voelkerding; Carl T Wittwer
Journal:  Exp Mol Pathol       Date:  2008-04-13       Impact factor: 3.362

4.  Genotypes of Giardia intestinalis clinical isolates of gastrointestinal symptomatic and asymptomatic Saudi children.

Authors:  Hamdan I Al-Mohammed
Journal:  Parasitol Res       Date:  2010-09-14       Impact factor: 2.289

5.  Molecular characterization of Giardia duodenalis in dogs from Brazil.

Authors:  Flávio M Paz e Silva; Paz E Silva; Marina M Monobe; Raimundo S Lopes; João P Araujo
Journal:  Parasitol Res       Date:  2011-06-22       Impact factor: 2.289

6.  Risk of giardiasis in Aucklanders: a case-control study.

Authors:  M Ekramul Hoque; Virginia T Hope; Tord Kjellström; Robert Scragg; Roy Lay-Yee
Journal:  Int J Infect Dis       Date:  2002-09       Impact factor: 3.623

7.  High-resolution melting analysis for detection of MYH9 mutations.

Authors:  Dana Provaznikova; Tereza Kumstyrova; Roman Kotlin; Peter Salaj; Vaclav Matoska; Ingrid Hrachovinova; Simon Rittich
Journal:  Platelets       Date:  2008-09       Impact factor: 3.862

8.  Application of HRM assays with EvaGreen dye for genotyping Giardia duodenalis zoonotic assemblages.

Authors:  Ping Zhang; Yuanjia Liu; Muhamd Alsarakibi; Jie Li; Tian Liu; Yawen Li; Guoqing Li
Journal:  Parasitol Res       Date:  2012-08-11       Impact factor: 2.289

9.  Genetic characterization of selected parasites from people with histories of gastrointestinal disorders using a mutation scanning-coupled approach.

Authors:  Anson V Koehler; Richard S Bradbury; Melita A Stevens; Shane R Haydon; Aaron R Jex; Robin B Gasser
Journal:  Electrophoresis       Date:  2013-05-26       Impact factor: 3.535

10.  Flowcytometric assessment of the effect of drugs on Giardia lamblia trophozoites in vitro.

Authors:  Harpreet Sandhu; Ramesh Chander Mahajan; Nirmal Kumar Ganguly
Journal:  Mol Cell Biochem       Date:  2004-10       Impact factor: 3.396

View more
  4 in total

1.  Development of T m -shift genotyping method for detection of cat-derived Giardia lamblia.

Authors:  Weida Pan; Yeqi Fu; Auwalu Yusuf Abdullahi; Mingwei Wang; Xianli Shi; Fang Yang; Xingang Yu; Xinxin Yan; Pan Zhang; Jianxiong Hang; Guoqing Li
Journal:  Parasitol Res       Date:  2017-02-15       Impact factor: 2.289

2.  PCR-RFLP method to detect zoonotic and host-specific Giardia duodenalis assemblages in dog fecal samples.

Authors:  Liping Tan; Sheng Wu; Auwalu Yusuf Abdullahi; Xinggang Yu; Wei Hu; Meiran Song; Xianli Shi; Guoqing Li
Journal:  Parasitol Res       Date:  2016-02-06       Impact factor: 2.289

3.  Genotype Characteristics of Giardia duodenalis in Patients Using High Resolution Melting Analysis Technique in Khorramabad, Iran.

Authors:  Akram Sepahvand; Ahmad Hosseini-Safa; Hossein Ali Yousofi; Mohammad Hassan Tajedini; Reza Pahlavan Gharehbabah; Nader Pestehchian
Journal:  Iran J Parasitol       Date:  2020 Apr-Jun       Impact factor: 1.012

4.  Rapid on-site diagnosis of canine giardiosis: time versus performance.

Authors:  Isaia Symeonidou; Athanasios Ι Gelasakis; Androulla N Miliotou; Athanasios Angelou; Konstantinos V Arsenopoulos; Sofia Loukeri; Elias Papadopoulos
Journal:  Parasit Vectors       Date:  2020-11-02       Impact factor: 3.876

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.