Literature DB >> 26206511

Complementarity and congruence between exact NOEs and traditional NMR probes for spatial decoding of protein dynamics.

Beat Vögeli1, Simon Olsson2, Roland Riek3, Peter Güntert4.   

Abstract

The study of the spatial sampling of biomolecules is essential to understanding the structure-dynamics-function relationship. We have established a protocol for the determination of multiple-state ensembles based on exact measurements of the nuclear Overhauser effect (eNOE). The protocol is practical since it does not require any additional data, while all other NMR data sets must be supplemented by NOE restraints. The question arises as to how much structural and dynamics information is shared between the eNOEs and other NMR probes. We compile one of the largest and most diverse NMR data sets of a protein to date consisting of eNOEs, RDCs and J couplings for GB3. We show that the eNOEs improve the back-prediction of RDCs and J couplings, either upon use of more than one state, or in comparison to conventional NOEs. Our findings indicate that the eNOE data is self-consistent, consistent with other data, and that the structural representation with multiple states is warranted.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Exact NOE; GB3; Protein ensemble; Structure determination; eNOE

Mesh:

Substances:

Year:  2015        PMID: 26206511     DOI: 10.1016/j.jsb.2015.07.008

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  5 in total

1.  The Exact NOE as an Alternative in Ensemble Structure Determination.

Authors:  Beat Vögeli; Simon Olsson; Peter Güntert; Roland Riek
Journal:  Biophys J       Date:  2016-01-05       Impact factor: 4.033

2.  Reconstruction of Coupled Intra- and Interdomain Protein Motion from Nuclear and Electron Magnetic Resonance.

Authors:  Alexandra Born; Janne Soetbeer; Frauke Breitgoff; Morkos A Henen; Nikolaos Sgourakis; Yevhen Polyhach; Parker J Nichols; Dean Strotz; Gunnar Jeschke; Beat Vögeli
Journal:  J Am Chem Soc       Date:  2021-09-27       Impact factor: 16.383

Review 3.  The Exact Nuclear Overhauser Enhancement: Recent Advances.

Authors:  Parker J Nichols; Alexandra Born; Morkos A Henen; Dean Strotz; Julien Orts; Simon Olsson; Peter Güntert; Celestine N Chi; Beat Vögeli
Journal:  Molecules       Date:  2017-07-14       Impact factor: 4.411

4.  Compiled data set of exact NOE distance limits, residual dipolar couplings and scalar couplings for the protein GB3.

Authors:  Beat Vögeli; Simon Olsson; Roland Riek; Peter Güntert
Journal:  Data Brief       Date:  2015-09-04

5.  High-resolution small RNA structures from exact nuclear Overhauser enhancement measurements without additional restraints.

Authors:  Parker J Nichols; Morkos A Henen; Alexandra Born; Dean Strotz; Peter Güntert; Beat Vögeli
Journal:  Commun Biol       Date:  2018-06-07
  5 in total

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