Literature DB >> 26205170

Genome skimming for next-generation biodiversity analysis.

Steven Dodsworth1.   

Abstract

Keywords:  DNA barcoding; genome skimming; high-throughput sequencing; phylogenetics; phylogenomics; systematics

Mesh：

Year:  2015        PMID： 26205170     DOI： 10.1016/j.tplants.2015.06.012

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN： 1360-1385            Impact factor:   18.313


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  42 in total

1.  Sequence Comparison Without Alignment: The SpaM Approaches.

Authors:  Burkhard Morgenstern
Journal:  Methods Mol Biol       Date:  2021

Review 2.  DNA barcoding of phytopathogens for disease diagnostics and bio-surveillance.

Authors:  Prassan Choudhary; Bansh Narayan Singh; Hillol Chakdar; Anil Kumar Saxena
Journal:  World J Microbiol Biotechnol       Date:  2021-02-19       Impact factor: 3.312

3.  Museomics Unveil the Phylogeny and Biogeography of the Neglected Juan Fernandez Archipelago Megalachne and Podophorus Endemic Grasses and Their Connection With Relict Pampean-Ventanian Fescues.

Authors:  María Fernanda Moreno-Aguilar; Itziar Arnelas; Aminael Sánchez-Rodríguez; Juan Viruel; Pilar Catalán
Journal:  Front Plant Sci       Date:  2020-06-26       Impact factor: 5.753

4.  APPLES: Scalable Distance-Based Phylogenetic Placement with or without Alignments.

Authors:  Metin Balaban; Shahab Sarmashghi; Siavash Mirarab
Journal:  Syst Biol       Date:  2020-05-01       Impact factor: 15.683

5.  Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage.

Authors:  Anna-Katharina Lau; Svenja Dörrer; Chris-André Leimeister; Christoph Bleidorn; Burkhard Morgenstern
Journal:  BMC Bioinformatics       Date:  2019-12-17       Impact factor: 3.169

6.  Aiming off the target: recycling target capture sequencing reads for investigating repetitive DNA.

Authors:  Lucas Costa; André Marques; Chris Buddenhagen; William Wayt Thomas; Bruno Huettel; Veit Schubert; Steven Dodsworth; Andreas Houben; Gustavo Souza; Andrea Pedrosa-Harand
Journal:  Ann Bot       Date:  2021-11-09       Impact factor: 5.040

7.  Chloroplast Genome Evolution in Actinidiaceae: clpP Loss, Heterogenous Divergence and Phylogenomic Practice.

Authors:  Wen-Cai Wang; Si-Yun Chen; Xian-Zhi Zhang
Journal:  PLoS One       Date:  2016-09-02       Impact factor: 3.240

8.  Replacing Sanger with Next Generation Sequencing to improve coverage and quality of reference DNA barcodes for plants.

Authors:  Mike J Wilkinson; Claudia Szabo; Caroline S Ford; Yuval Yarom; Adam E Croxford; Amanda Camp; Paul Gooding
Journal:  Sci Rep       Date:  2017-04-12       Impact factor: 4.379

9.  Phylogenomics illuminates the evolution of bobtail and bottletail squid (order Sepiolida).

Authors:  Gustavo Sanchez; Fernando Á Fernández-Álvarez; Morag Taite; Chikatoshi Sugimoto; Jeffrey Jolly; Oleg Simakov; Ferdinand Marlétaz; Louise Allcock; Daniel S Rokhsar
Journal:  Commun Biol       Date:  2021-06-29

10.  Reference-based RADseq resolves robust relationships among closely related species of lichen-forming fungi using metagenomic DNA.

Authors:  Felix Grewe; Jen-Pen Huang; Steven D Leavitt; H Thorsten Lumbsch
Journal:  Sci Rep       Date:  2017-08-29       Impact factor: 4.379
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