| Literature DB >> 26203251 |
Hasan Kandemir1, Mehmet Emin Erdal2, Salih Selek3, Özlem İzci Ay2, İbrahim Fatih Karababa4, Mustafa Ertan Ay2, Sultan Basmacı Kandemir5, Şenay Görücü Yılmaz2, Suat Ekinci6, Bahar Taşdelen7, Hüseyin Bayazit4.
Abstract
AIM: Obsessive-compulsive disorder (OCD) is a disorder characterized by the presence of obsessions and/or compulsions. Although disorder etiology and pathogenesis remains unknown, several theories about OCD development have been proposed, and many researchers believe that it is caused by both genetic and environmental factors. In the current study, our aim was to investigate miRNA levels in OCD.Entities:
Keywords: OCD; child psychiatry; miRNA; micro RNA; psychiatry
Year: 2015 PMID: 26203251 PMCID: PMC4508068 DOI: 10.2147/NDT.S81884
Source DB: PubMed Journal: Neuropsychiatr Dis Treat ISSN: 1176-6328 Impact factor: 2.570
Some of the features of the studied miRNAs
| miRNA | Rationale for inclusion in the current study | Previous studies’ findings | References |
|---|---|---|---|
| miR18a-5p | Believed to be involved in DNA damage in OCD | Altered in DNA damage response | |
| miR22-3p | Believed to regulate four candidate genes: | Found to be altered in panic disorder | |
| miR24-3p | Believed to be related to oxidative stress, which is a potential neurobiological mechanism in OCD | Found to be altered in oxidative DNA damage and lipid peroxidation | |
| miR106b-5p | Believed to be related to oxidative stress, which is a potential neurobiological mechanism in OCD | Downregulated in resveratrol treatment that has antioxidant properties | |
| miR107 | Believed to be related to minimal brain change in OCD | Altered in traumatic brain injury and neurodegenerative diseases | |
| miR125b-5p | Believed to be related to hypoxia in OCD | Altered in high altitude sickness | |
| miR155a-5p | Believed to be related to inflammation which is a potential neurobiological mechanism in OCD | Altered in inflammation |
Abbreviations: BDNF, brain-derived neurotrophic factor; OCD, obsessive–compulsive disorder.
Primer/probe sequences of the miRNAs analyzed by quantitative RT–PCR
| miRNA name | Gene ID* | NCBI reference sequence number** | Primer/probe sequence |
|---|---|---|---|
| hsa-miR26b-5p | 407017 | NR_029500.1 | hsa-miR-26b-5p-RT 5′-GTCGTATGCAGTGCAGGGTCCGAGGTATTCGCACTGCATACGACACCTAT-3′ |
| hsa-miR-26b-5p-F 5′-GCCGCTTCAAGTAATTCAGG-3′ | |||
| hsa-miR-26b-5p-PR 5′-FAM-TG(pdC)ATA(pdC)GA(pdC)A(pdC)CTATCC-ZNA4-BHQ-1-3′ | |||
| hsa-miR18a-5p | 406953 | NR_029488.1 | hsa-miR-18a-5p-RT 5′-GTCGTATGCAGTGCAGGGTCCGAGGTATTCGCACTGCATACGACCTATCT-3′ |
| hsa-miR-18a-5p-F 5′-GCCGCTAAGGTGCATCTAGTG-3′ | |||
| hsa-miR-18a-5p-PR 5′-FAM-TG(pdC)ATA(pdC)GA(pdC)CTAT(pdC)TGC-ZNA4-BHQ-1-3′ | |||
| hsa-miR22-3p | 407004 | NR_029494.1 | hsa-miR-22-3p-RT 5′-GTCGTATGCAGTGCAGGGTCCGAGGTATTCGCACTGCATACGACACAGTT-3′ |
| hsa-miR-22-3p-F 5′-GCCGCAAGCTGCCAGTT-3′ | |||
| hsa-miR-22-3p-PR 5′-FAM-TG(pdC)ATA(pdC)GA(pdC)A(pdC)AGTT(pdC)T-ZNA4-BHQ-1-3′ | |||
| hsa-miR24-3p | 407012 | NR_029496.1 | hsa-miR-24-3p-RT 5′-GTCGTATGCAGTGCAGGGTCCGAGGTATTCGCACTGCATACGACCTGTTC-3′ |
| hsa-miR-24-3p-F 5′-GCCGCTGGCTCAGTTCAG-3′ | |||
| hsa-miR-24-3p-PR 5′-FAM-TG(pdC)ATA(pdC)GA(pdC)CTGTTCCT-ZNA4-BHQ-1-3′ | |||
| hsa-miR106b-5p | 406900 | NR_029831.1 | hsa-miR-106b-5p-RT 5′-GTCGTATGCAGTGCAGGGTCCGAGGTATTCGCACTGCATACGACATCTGC-3′ |
| hsa-miR-106b-5p-F 5′-GCCGCTAAAGTGCTGACAGT-3′ | |||
| hsa-miR-106b-5p-PR 5′-FAM-TG(pdC)ATA(pdC)GA(pdC)ATCTGCAC-ZNA4-BHQ1-3′ | |||
| hsa-miR107 | 406901 | NR_029524.1 | hsa-miR-107-RT 5′-GTCGTATGCAGTGCAGGGTCCGAGGTATTCGCACTGCATACGACTGATAG-3′ |
| hsa-miR-107-F 5′-GCCGCAGCAGCATTGTACAGGG-3′ | |||
| hsa-miR-107-PR 5′-FAM-TG(pdC)ATA(pdC)GA(pdC)TGATAG(pdC)C-ZNA4-BHQ-1-3′ | |||
| hsa-miR-125b-5p | 406911 | NR_029671.1 | hsa-miR-125b-5p-RT 5′-GTCGTATGCAGTGCAGGGTCCGAGGTATTCGCACTGCATACGACTCACAA-3′ |
| hsa-miR-125b-5p-F 5′-GCCGCTCCCTGAGACCCTAAC-3′ | |||
| hsa-miR-125b-5p-PR 5′-FAM-TG(pdC)ATA(pdC)GA(pdC)T(pdC)A(pdC)AAGT-ZNA4-BHQ1-3′ | |||
| hsa-miR155-5p | 406947 | NR_030784.1 | hsa-miR-155-5p-RT 5′-GTCGTATGCAGTGCAGGGTCCGAGGTATTCGCACTGCATACGACACCCCT-3′ |
| hsa-miR-155-5p-F 5′-GCCGCTTAATGCTAATCGTGAT-3′ | |||
| hsa-miR-155-5p-PR 5′-FAM-TG(pdC)ATA(pdC)GA(pdC)A(pdC)C(pdC)(pdC)TAT-BHQ-1-3′ | |||
| miR-Universal-R 5′-GTGCAGGGTCCGAGGTAT-3′ |
Notes: The substitution of C-5 propynyl-dC (pdC) for dC is an effective strategy to enhance base pairing. Using these base substitutions, duplex stability and melting temperatures are raised by C-5 propynyl-C 2.8°C per substitution. Zip nucleic acid (ZNA) probes provide broad flexibility in assay design and represent an effective alternative to minor groove binder (MGB)- and locked nucleic acid (LNA)-containing oligonucleotides.34,41
Abbreviations: ID, identification; NCBI, National Center for Biotechnology Information; RT-PCR, reverse transcription polymerase chain reaction.
Sociodemographic and clinical characteristics of OCD patients
| OCD patients (n=23) | Controls (n=40) | ||
|---|---|---|---|
| Sex: male/female (n) | 15/8 | 26/14 | 0.987 |
| Age: mean ± SD (years) | 10.60±2.06 | 11.25±2.93 | 0.374 |
| Age range (years) | 7–16 | 7–17 |
Notes:
χ2 test;
Student’s t-test.
Abbreviations: OCD, obsessive–compulsive disorder; SD, standard deviation.
Comparison of miRNA levels
| Controls
| Patients with OCD
| ||||
|---|---|---|---|---|---|
| Median | 25%–75% | Median | 25%–75% | ||
| hsa-miR18a-5p | 2.0884 | 1.2391–3.4683 | 2.2334 | 0.5514–8.0329 | 0.898 |
| hsa-miR22-3p | 0.7023 | 0.2737–1.9575 | 9.0235 | 1.1827–46.7572 | |
| hsa-miR24-3p | 1.2362 | 0.5471–2.0238 | 2.1497 | 1.5132–6.9911 | |
| hsa-miR106b-5p | 1.8210 | 1.1544–2.7165 | 7.0767 | 2.6346–18.3542 | < |
| hsa-miR107 | 1.9392 | 0.8819–4.5595 | 1.9309 | 0.4692–5.6560 | 0.775 |
| hsa-miR125b-5p | 1.6689 | 0.8125–4.5344 | 7.2907 | 2.4899–40.1506 | |
| hsa-miR155-5p | 0.3331 | 0.1660–0.9977 | 5.4671 | 1.6614–8.2755 | < |
Notes:
Mann–Whitney U-test. Bold font indicates significant differences (P-values) of 0.05 were regarded as significant.
Abbreviation: OCD, obsessive–compulsive disorder.