Literature DB >> 26203041

A computer simulation approach to quantify the true area and true area compressibility modulus of biological membranes.

Enrique Chacón1, Pedro Tarazona2, Fernando Bresme3.   

Abstract

We present a new computational approach to quantify the area per lipid and the area compressibility modulus of biological membranes. Our method relies on the analysis of the membrane fluctuations using our recently introduced coupled undulatory (CU) mode [Tarazona et al., J. Chem. Phys. 139, 094902 (2013)], which provides excellent estimates of the bending modulus of model membranes. Unlike the projected area, widely used in computer simulations of membranes, the CU area is thermodynamically consistent. This new area definition makes it possible to accurately estimate the area of the undulating bilayer, and the area per lipid, by excluding any contributions related to the phospholipid protrusions. We find that the area per phospholipid and the area compressibility modulus features a negligible dependence with system size, making possible their computation using truly small bilayers, involving a few hundred lipids. The area compressibility modulus obtained from the analysis of the CU area fluctuations is fully consistent with the Hooke's law route. Unlike existing methods, our approach relies on a single simulation, and no a priori knowledge of the bending modulus is required. We illustrate our method by analyzing 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine bilayers using the coarse grained MARTINI force-field. The area per lipid and area compressibility modulus obtained with our method and the MARTINI forcefield are consistent with previous studies of these bilayers.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26203041     DOI: 10.1063/1.4926938

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Site-Specific Peroxidation Modulates Lipid Bilayer Mechanics.

Authors:  Choon-Peng Chng; Yoel Sadovsky; K Jimmy Hsia; Changjin Huang
Journal:  Extreme Mech Lett       Date:  2020-12-14

2.  Large-scale simulation of biomembranes incorporating realistic kinetics into coarse-grained models.

Authors:  Mohsen Sadeghi; Frank Noé
Journal:  Nat Commun       Date:  2020-06-11       Impact factor: 14.919

3.  Role of lipid composition on the structural and mechanical features of axonal membranes: a molecular simulation study.

Authors:  Marzieh Saeedimasine; Annaclaudia Montanino; Svein Kleiven; Alessandra Villa
Journal:  Sci Rep       Date:  2019-05-29       Impact factor: 4.379

4.  Bending Modulus of Lipid Membranes from Density Correlation Functions.

Authors:  Jose Hernández-Muñoz; Fernando Bresme; Pedro Tarazona; Enrique Chacón
Journal:  J Chem Theory Comput       Date:  2022-04-07       Impact factor: 6.578

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.