Literature DB >> 26203015

Sparse maps—A systematic infrastructure for reduced-scaling electronic structure methods. I. An efficient and simple linear scaling local MP2 method that uses an intermediate basis of pair natural orbitals.

Peter Pinski1, Christoph Riplinger1, Edward F Valeev2, Frank Neese1.   

Abstract

In this work, a systematic infrastructure is described that formalizes concepts implicit in previous work and greatly simplifies computer implementation of reduced-scaling electronic structure methods. The key concept is sparse representation of tensors using chains of sparse maps between two index sets. Sparse map representation can be viewed as a generalization of compressed sparse row, a common representation of a sparse matrix, to tensor data. By combining few elementary operations on sparse maps (inversion, chaining, intersection, etc.), complex algorithms can be developed, illustrated here by a linear-scaling transformation of three-center Coulomb integrals based on our compact code library that implements sparse maps and operations on them. The sparsity of the three-center integrals arises from spatial locality of the basis functions and domain density fitting approximation. A novel feature of our approach is the use of differential overlap integrals computed in linear-scaling fashion for screening products of basis functions. Finally, a robust linear scaling domain based local pair natural orbital second-order Möller-Plesset (DLPNO-MP2) method is described based on the sparse map infrastructure that only depends on a minimal number of cutoff parameters that can be systematically tightened to approach 100% of the canonical MP2 correlation energy. With default truncation thresholds, DLPNO-MP2 recovers more than 99.9% of the canonical resolution of the identity MP2 (RI-MP2) energy while still showing a very early crossover with respect to the computational effort. Based on extensive benchmark calculations, relative energies are reproduced with an error of typically <0.2 kcal/mol. The efficiency of the local MP2 (LMP2) method can be drastically improved by carrying out the LMP2 iterations in a basis of pair natural orbitals. While the present work focuses on local electron correlation, it is of much broader applicability to computation with sparse tensors in quantum chemistry and beyond.

Entities:  

Year:  2015        PMID: 26203015     DOI: 10.1063/1.4926879

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  13 in total

1.  Optimization of the linear-scaling local natural orbital CCSD(T) method: Redundancy-free triples correction using Laplace transform.

Authors:  Péter R Nagy; Mihály Kállay
Journal:  J Chem Phys       Date:  2017-06-07       Impact factor: 3.488

2.  Laplace-transformed multi-reference second-order perturbation theories in the atomic and active molecular orbital basis.

Authors:  Benjamin Helmich-Paris; Stefan Knecht
Journal:  J Chem Phys       Date:  2017-06-14       Impact factor: 3.488

3.  SAMPL6 logP challenge: machine learning and quantum mechanical approaches.

Authors:  Prajay Patel; David M Kuntz; Michael R Jones; Bernard R Brooks; Angela K Wilson
Journal:  J Comput Aided Mol Des       Date:  2020-01-30       Impact factor: 3.686

4.  Analytical Energy Gradients for the Cluster-in-Molecule MP2 Method and Its Application to Geometry Optimizations of Large Systems.

Authors:  Zhigang Ni; Yuqi Wang; Wei Li; Peter Pulay; Shuhua Li
Journal:  J Chem Theory Comput       Date:  2019-05-31       Impact factor: 6.006

5.  Mechanism of Chemical and Electrochemical N2 Splitting by a Rhenium Pincer Complex.

Authors:  Brian M Lindley; Richt S van Alten; Markus Finger; Florian Schendzielorz; Christian Würtele; Alexander J M Miller; Inke Siewert; Sven Schneider
Journal:  J Am Chem Soc       Date:  2018-06-19       Impact factor: 15.419

6.  A paramedic treatment for modeling explicitly solvated chemical reaction mechanisms.

Authors:  Yasemin Basdogan; John A Keith
Journal:  Chem Sci       Date:  2018-05-30       Impact factor: 9.825

7.  A Quadratic Pair Atomic Resolution of the Identity Based SOS-AO-MP2 Algorithm Using Slater Type Orbitals.

Authors:  Arno Förster; Mirko Franchini; Erik van Lenthe; Lucas Visscher
Journal:  J Chem Theory Comput       Date:  2020-01-24       Impact factor: 6.006

8.  Binding free energies in the SAMPL5 octa-acid host-guest challenge calculated with DFT-D3 and CCSD(T).

Authors:  Octav Caldararu; Martin A Olsson; Christoph Riplinger; Frank Neese; Ulf Ryde
Journal:  J Comput Aided Mol Des       Date:  2016-09-06       Impact factor: 3.686

9.  Performance of Localized Coupled Cluster Methods in a Moderately Strong Correlation Regime: Hückel-Möbius Interconversions in Expanded Porphyrins.

Authors:  Nitai Sylvetsky; Ambar Banerjee; Mercedes Alonso; Jan M L Martin
Journal:  J Chem Theory Comput       Date:  2020-05-11       Impact factor: 6.006

10.  Canonical and DLPNO-Based Composite Wavefunction Methods Parametrized against Large and Chemically Diverse Training Sets. 2: Correlation-Consistent Basis Sets, Core-Valence Correlation, and F12 Alternatives.

Authors:  Emmanouil Semidalas; Jan M L Martin
Journal:  J Chem Theory Comput       Date:  2020-11-17       Impact factor: 6.006

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