Literature DB >> 26202114

A Single Nucleotide Polymorphism at the TaqMan Probe-Binding Site Impedes Real-Time Reverse Transcription-PCR-Based Detection of Norovirus GII.4 Sydney.

Ran Zhuo1, Maria Eloisa Hasing1, Xiaoli Pang2.   

Abstract

A single nucleotide polymorphism (SNP) in the TaqMan probe-binding site resulted in decreased sensitivity of real-time reverse transcription-PCR (RT-rtPCR) for detection of norovirus genogroup II genotype 4 (GII.4) Sydney. A new degenerate probe was designed that improved the sensitivity of the detection while not interfering with the detection of other GII and GI strains.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID： 26202114      PMCID： PMC4572533          DOI： 10.1128/JCM.01044-15

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  10 in total

1.  Broadly reactive and highly sensitive assay for Norwalk-like viruses based on real-time quantitative reverse transcription-PCR.

Authors:  Tsutomu Kageyama; Shigeyuki Kojima; Michiyo Shinohara; Kazue Uchida; Shuetsu Fukushi; Fuminori B Hoshino; Naokazu Takeda; Kazuhiko Katayama
Journal:  J Clin Microbiol       Date:  2003-04       Impact factor: 5.948

2.  Analytical performance of norovirus real-time RT-PCR detection protocols in Canadian laboratories.

Authors:  Kirsten Mattison; Elsie Grudeski; Brian Auk; Julie Brassard; Hugues Charest; Kerry Dust; Jonathan Gubbay; Todd F Hatchette; Alain Houde; Julie Jean; Tineke Jones; Bonita E Lee; Hiroshi Mamiya; Ryan McDonald; Oksana Mykytczuk; Xiaoli Pang; Astrid Petrich; Daniel Plante; Gordon Ritchie; Julie Wong; Tim F Booth
Journal:  J Clin Virol       Date:  2010-11-10       Impact factor: 3.168

3.  Genogroup I and II noroviruses detected in stool samples by real-time reverse transcription-PCR using highly degenerate universal primers.

Authors:  Gary P Richards; Michael A Watson; Rebecca L Fankhauser; Stephan S Monroe
Journal:  Appl Environ Microbiol       Date:  2004-12       Impact factor: 4.792

4.  Norovirus illness is a global problem: emergence and spread of norovirus GII.4 variants, 2001-2007.

Authors:  J Joukje Siebenga; Harry Vennema; Du-Ping Zheng; Jan Vinjé; Bonita E Lee; Xiao-Li Pang; Eric C M Ho; Wilina Lim; Avinash Choudekar; Shobha Broor; Tamar Halperin; Nassar B G Rasool; Joanne Hewitt; Gail E Greening; Miao Jin; Zhao-Jun Duan; Yalda Lucero; Miguel O'Ryan; Marina Hoehne; Eckart Schreier; Rodney M Ratcliff; Peter A White; Nobuhiro Iritani; Gábor Reuter; Marion Koopmans
Journal:  J Infect Dis       Date:  2009-09-01       Impact factor: 5.226

5.  Sensitive and rapid detection of norovirus using duplex TaqMan reverse transcription-polymerase chain reaction.

Authors:  Setsuko Ishida; Shima Yoshizumi; Tetsuya Ikeda; Masahiro Miyoshi; Motohiko Okano; Toyo Okui
Journal:  J Med Virol       Date:  2008-05       Impact factor: 2.327

6.  Indications for worldwide increased norovirus activity associated with emergence of a new variant of genotype II.4, late 2012.

Authors:  J van Beek; K Ambert-Balay; N Botteldoorn; J S Eden; J Fonager; J Hewitt; N Iritani; A Kroneman; H Vennema; J Vinjé; P A White; M Koopmans
Journal:  Euro Surveill       Date:  2013-01-03

7.  Detection and analysis of recombination in GII.4 norovirus strains causing gastroenteritis outbreaks in Alberta.

Authors:  Maria E Hasing; Bart Hazes; Bonita E Lee; Jutta K Preiksaitis; Xiaoli L Pang
Journal:  Infect Genet Evol       Date:  2014-07-24       Impact factor: 3.342

8.  Correlation of patient immune responses with genetically characterized small round-structured viruses involved in outbreaks of nonbacterial acute gastroenteritis in the United States, 1990 to 1995.

Authors:  J S Noel; T Ando; J P Leite; K Y Green; K E Dingle; M K Estes; Y Seto; S S Monroe; R I Glass
Journal:  J Med Virol       Date:  1997-12       Impact factor: 2.327

9.  Multiplex real time RT-PCR for the detection and quantitation of norovirus genogroups I and II in patients with acute gastroenteritis.

Authors:  Xiaoli L Pang; Jutta K Preiksaitis; Bonita Lee
Journal:  J Clin Virol       Date:  2005-06       Impact factor: 3.168

10.  Rapid evolution of pandemic noroviruses of the GII.4 lineage.

Authors:  Rowena A Bull; John-Sebastian Eden; William D Rawlinson; Peter A White
Journal:  PLoS Pathog       Date:  2010-03-26       Impact factor: 6.823
  10 in total
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1.  Identification of CYP2D6 Haplotypes that Interfere with Commonly Used Assays for Copy Number Variation Characterization.

Authors:  Amy J Turner; Praful Aggarwal; Erin C Boone; Cyrine-Eliana Haidar; Mary V Relling; Ashley D Derezinski; Ulrich Broeckel; Andrea Gaedigk
Journal:  J Mol Diagn       Date:  2021-02-22       Impact factor: 5.568
  1 in total

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