| Literature DB >> 26201513 |
Milene Gonçalves Quiles1, Liana Carballo Menezes2, Karen de Castro Bauab3, Elke Kreuscher Gumpl4, Talita Trevizani Rocchetti5, Flavia Silva Palomo6, Fabianne Carlesse7, Antonio Carlos Campos Pignatari8.
Abstract
BACKGROUND: Infections are the major cause of morbidity and mortality in children with cancer. Gaining a favorable prognosis for these patients depends on selecting the appropriate therapy, which in turn depends on rapid and accurate microbiological diagnosis. This study employed real-time PCR (qPCR) to identify the main pathogens causing bloodstream infection (BSI) in patients treated at the Pediatric Oncology Institute IOP-GRAACC-UNIFESP-Brazil. Antimicrobial resistance genes were also investigated using this methodology.Entities:
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Year: 2015 PMID: 26201513 PMCID: PMC4512024 DOI: 10.1186/s12879-015-1033-6
Source DB: PubMed Journal: BMC Infect Dis ISSN: 1471-2334 Impact factor: 3.090
Comparison of phenotypic and molecular assays apllied to bloodculture bottles
| Phenotipyc detection and identification by phenotypic analisys ( | Molecucar detection by GP/GN multiplex PCR | Concordance (%) | Molecular identification by specific-species qPCR ( | Concordance (%) | Average Cycle threshold | |
|---|---|---|---|---|---|---|
|
| 12 | 12 | 100 % | 10 | 83.40 % | 17,683 |
| SCoN | 35 | 28 | 80 % | 32 | 91.40 % | 20,608 |
|
| 5 | 5 | 100 % | 5 | 100 % | 24,923 |
|
| 1 | 1 | 100 % | 1 | 100 % | 20,977 |
|
| 3 | 3 | 100 % | 3 | 100 % | 29,111 |
|
| 6 | 6 | 100 % | 6 | 100 % | 20,919 |
|
| 8 | 7 | 87.50 % | 7 | 87.50 % | 18,995 |
|
| 2 | 2 | 100 % | 2 | 100 % | 25,252 |
|
| 14 | 13 | 92.80 % | 13 | 92.80 % | 19,395 |
|
| 1 | 1 | 100 % | 1 | 100 % | 36,974 |
|
| 1 | 1 | 100 % | 1 | 100 % | 27,993 |
|
| 12 | 12 | 100 % | 3 | 25 % | 25,464 |
| Other fungi | 2 | 2 | 100 % | a | a | a |
|
| 9 | 7 | 77.80 % | a | a | a |
| Others | 13 | 12 | 92.30 % | a | a | a |
aSpecies not included in the in-house qPCR standardized assay described in this study
Phenotypic and molecular results from whole blood samples and paired BC bottles
| BC Sample (BACTEC) | Whole blood sample (EDTA) | Specie isolated from BC bottle (Phoenix®) | Susceptibility profile (Phoenix®) | qPCR from BC bottles for resistance genes (ct) | qPCR from whole blood for resistance genes (ct) |
|---|---|---|---|---|---|
| 195 | 176 |
| Oxacillin S | mecA (21,855) |
|
| 178 | 117 | a | a | ND |
|
| 190 | 152 |
| Carbapenem S | ND | ND |
| 191 | 174 |
| Carbapenem S | ND | ND |
| 283 | 133 |
| Carbapenem S | ND | ND |
| 391 | 255 |
| Carbapenem S | ND | ND |
| 404 | 232 |
| Vancomicyn S | ND | ND |
| 341 | 233 |
| Oxacillin R |
|
|
| 371 | 240 |
| Carbapenem S | ND | ND |
| 400 | 252 |
| Carbapenem S | ND | ND |
| 477 | 288 |
| Oxacillin R |
|
|
| 389 | 237 |
| Carbapenem S | ND | ND |
| 369 | 244 | SCoN | Oxacillin S | ND |
|
| 372 | 247 |
| Carbapenem S | ND | ND |
| 373 | 254 |
| Oxacillin R |
|
|
| 392 | 241 |
| Oxacillin R |
|
|
| 431 | 276 | SCoN | Oxacillin R |
|
|
| 465 | 293 |
| Carbapenem R | ND | ND |
| 441 | 273 |
| Oxacillin R | ND | ND |
| 422 | 264 |
| Oxacillin R |
|
|
| 423 | 265 | SCoN | Oxacillin R |
|
|
| 470 | 290 |
| Vancomicyn R |
|
|
BC Bloodculture bottle, ct cycle threshold, R resistant, S Susceptible, ND Not detected
aNegative sample at Phenotypic tests