Literature DB >> 26200932

Cardiac extracellular matrix proteomics: Challenges, techniques, and clinical implications.

Chia Wei Chang1, Ailsa J Dalgliesh1, Javier E López2, Leigh G Griffiths1.   

Abstract

Extracellular matrix (ECM) has emerged as a dynamic tissue component, providing not only structural support, but also functionally participating in a wide range of signaling events during development, injury, and disease remodeling. Investigation of dynamic changes in cardiac ECM proteome is challenging due to the relative insolubility of ECM proteins, which results from their macromolecular nature, extensive post-translational modification (PTM), and tendency to form protein complexes. Finally, the relative abundance of cellular and mitochondrial proteins in cardiac tissue further complicates cardiac ECM proteomic approaches. Recent developments of various techniques to enrich and analyze ECM proteins are playing a major role in overcoming these challenges. Application of cardiac ECM proteomics in disease tissues can further provide spatial and temporal information relevant to disease diagnosis, prognosis, treatment, and engineering of therapeutic candidates for cardiac repair and regeneration.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  Cardiac diseases; Decellularization; Extracellular matrix biomarker; Extracellular matrix remodeling; Extracellular proteomics

Mesh:

Substances:

Year:  2015        PMID: 26200932      PMCID: PMC4703519          DOI: 10.1002/prca.201500030

Source DB:  PubMed          Journal:  Proteomics Clin Appl        ISSN: 1862-8346            Impact factor:   3.494


  60 in total

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Review 2.  The (dys)functional extracellular matrix.

Authors:  Benjamin R Freedman; Nathan D Bade; Corinne N Riggin; Sijia Zhang; Philip G Haines; Katy L Ong; Paul A Janmey
Journal:  Biochim Biophys Acta       Date:  2015-04-27

3.  Proteomic analysis identifies in vivo candidate matrix metalloproteinase-9 substrates in the left ventricle post-myocardial infarction.

Authors:  Rogelio Zamilpa; Elizabeth F Lopez; Ying Ann Chiao; Qiuxia Dai; Gladys P Escobar; Kevin Hakala; Susan T Weintraub; Merry L Lindsey
Journal:  Proteomics       Date:  2010-06       Impact factor: 3.984

4.  Effects of selective matrix metalloproteinase inhibitor (PG-116800) to prevent ventricular remodeling after myocardial infarction: results of the PREMIER (Prevention of Myocardial Infarction Early Remodeling) trial.

Authors:  Michael P Hudson; Paul W Armstrong; Witold Ruzyllo; Jose Brum; Lisa Cusmano; Piotr Krzeski; Robert Lyon; Miguel Quinones; Pierre Theroux; Diana Sydlowski; Henry E Kim; Mario J Garcia; Wael A Jaber; W Douglas Weaver
Journal:  J Am Coll Cardiol       Date:  2006-06-21       Impact factor: 24.094

Review 5.  Defining the extracellular matrix using proteomics.

Authors:  Adam Byron; Jonathan D Humphries; Martin J Humphries
Journal:  Int J Exp Pathol       Date:  2013-02-19       Impact factor: 1.925

Review 6.  Top-down proteomics in health and disease: challenges and opportunities.

Authors:  Zachery R Gregorich; Ying Ge
Journal:  Proteomics       Date:  2014-05       Impact factor: 3.984

7.  Matrix metalloproteinase inhibition attenuates early left ventricular enlargement after experimental myocardial infarction in mice.

Authors:  L E Rohde; A Ducharme; L H Arroyo; M Aikawa; G H Sukhova; A Lopez-Anaya; K F McClure; P G Mitchell; P Libby; R T Lee
Journal:  Circulation       Date:  1999-06-15       Impact factor: 29.690

8.  Degree of cardiac fibrosis and hypertrophy at time of implantation predicts myocardial improvement during left ventricular assist device support.

Authors:  Brian A Bruckner; Peter Razeghi; Sonny Stetson; Larry Thompson; Javier Lafuente; Mark Entman; Matthias Loebe; George Noon; Heinrich Taegtmeyer; O H Frazier; Keith Youker
Journal:  J Heart Lung Transplant       Date:  2004-01       Impact factor: 10.247

9.  Angiotensin II blockade and aortic-root dilation in Marfan's syndrome.

Authors:  Benjamin S Brooke; Jennifer P Habashi; Daniel P Judge; Nishant Patel; Bart Loeys; Harry C Dietz
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Review 10.  Integrin β1: A Mechanosignaling Sensor Essential for Connective Tissue Deposition by Fibroblasts.

Authors:  Andrew Leask
Journal:  Adv Wound Care (New Rochelle)       Date:  2013-05       Impact factor: 4.730

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  16 in total

1.  MMP9 inhibition increases autophagic flux in chronic heart failure.

Authors:  Shyam S Nandi; Kenichi Katsurada; Neeru M Sharma; Daniel R Anderson; Sushil K Mahata; Kaushik P Patel
Journal:  Am J Physiol Heart Circ Physiol       Date:  2020-10-16       Impact factor: 4.733

2.  Novel large-particle FACS purification of adult ventricular myocytes reveals accumulation of myosin and actin disproportionate to cell size and proteome in normal post-weaning development.

Authors:  Javier E López; Janhavi Sharma; Jorge Avila; Taylor S Wood; Jonathan E VanDyke; Bridget McLaughlin; Craig K Abbey; Andrew Wong; Bat-Erdene Myagmar; Philip M Swigart; Paul C Simpson; Nipavan Chiamvimonvat
Journal:  J Mol Cell Cardiol       Date:  2017-08-02       Impact factor: 5.000

Review 3.  Proteomic analysis of the cardiac extracellular matrix: clinical research applications.

Authors:  Merry L Lindsey; Mira Jung; Michael E Hall; Kristine Y DeLeon-Pennell
Journal:  Expert Rev Proteomics       Date:  2018-01-09       Impact factor: 3.940

4.  Multiomics Method Enabled by Sequential Metabolomics and Proteomics for Human Pluripotent Stem-Cell-Derived Cardiomyocytes.

Authors:  Elizabeth F Bayne; Aaron D Simmons; David S Roberts; Yanlong Zhu; Timothy J Aballo; Benjamin Wancewicz; Sean P Palecek; Ying Ge
Journal:  J Proteome Res       Date:  2021-09-09       Impact factor: 5.370

Review 5.  Posttranslational Modifications: Emerging Prospects for Cardiac Regeneration Therapy.

Authors:  Ya-Fei Li; Ya-Xin Wang; Hao Wang; Yao Ma; Lian-Sheng Wang
Journal:  J Cardiovasc Transl Res       Date:  2021-05-24       Impact factor: 4.132

Review 6.  Systems biology-opportunities and challenges: the application of proteomics to study the cardiovascular extracellular matrix.

Authors:  Javier Barallobre-Barreiro; Marc Lynch; Xiaoke Yin; Manuel Mayr
Journal:  Cardiovasc Res       Date:  2016-09-15       Impact factor: 10.787

Review 7.  Cardiac Non-Human Leukocyte Antigen Identification: Techniques and Troubles.

Authors:  Katherine V Gates; Naveen L Pereira; Leigh G Griffiths
Journal:  Front Immunol       Date:  2017-10-18       Impact factor: 7.561

Review 8.  Costameres, dense plaques and podosomes: the cell matrix adhesions in cardiovascular mechanosensing.

Authors:  Brian Sit; Daniel Gutmann; Thomas Iskratsch
Journal:  J Muscle Res Cell Motil       Date:  2019-06-18       Impact factor: 2.698

Review 9.  Cardiomyogenesis Modeling Using Pluripotent Stem Cells: The Role of Microenvironmental Signaling.

Authors:  Amanda Leitolis; Anny W Robert; Isabela T Pereira; Alejandro Correa; Marco A Stimamiglio
Journal:  Front Cell Dev Biol       Date:  2019-08-09

10.  Geometry-dependent functional changes in iPSC-derived cardiomyocytes probed by functional imaging and RNA sequencing.

Authors:  Christopher A Werley; Miao-Ping Chien; Jellert Gaublomme; Karthik Shekhar; Vincent Butty; B Alexander Yi; Joel M Kralj; Blox Bloxham; Laurie A Boyer; Aviv Regev; Adam E Cohen
Journal:  PLoS One       Date:  2017-03-23       Impact factor: 3.752

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