Literature DB >> 26200345

Non-coding recurrent mutations in chronic lymphocytic leukaemia.

Xose S Puente1, Silvia Beà2, Rafael Valdés-Mas1, Neus Villamor3, Jesús Gutiérrez-Abril1, José I Martín-Subero4, Marta Munar5, Carlota Rubio-Pérez6, Pedro Jares7, Marta Aymerich3, Tycho Baumann8, Renée Beekman2, Laura Belver9, Anna Carrio3, Giancarlo Castellano2, Guillem Clot2, Enrique Colado10, Dolors Colomer3, Dolors Costa3, Julio Delgado8, Anna Enjuanes7, Xavier Estivill11, Adolfo A Ferrando9, Josep L Gelpí5, Blanca González3, Santiago González5, Marcos González12, Marta Gut13, Jesús M Hernández-Rivas12, Mónica López-Guerra3, David Martín-García2, Alba Navarro2, Pilar Nicolás14, Modesto Orozco5, Ángel R Payer10, Magda Pinyol7, David G Pisano15, Diana A Puente1, Ana C Queirós4, Víctor Quesada1, Carlos M Romeo-Casabona14, Cristina Royo2, Romina Royo5, María Rozman3, Nuria Russiñol2, Itziar Salaverría2, Kostas Stamatopoulos16, Hendrik G Stunnenberg17, David Tamborero6, María J Terol18, Alfonso Valencia15, Nuria López-Bigas6, David Torrents5, Ivo Gut13, Armando López-Guillermo8, Carlos López-Otín1, Elías Campo3.   

Abstract

Chronic lymphocytic leukaemia (CLL) is a frequent disease in which the genetic alterations determining the clinicobiological behaviour are not fully understood. Here we describe a comprehensive evaluation of the genomic landscape of 452 CLL cases and 54 patients with monoclonal B-lymphocytosis, a precursor disorder. We extend the number of CLL driver alterations, including changes in ZNF292, ZMYM3, ARID1A and PTPN11. We also identify novel recurrent mutations in non-coding regions, including the 3' region of NOTCH1, which cause aberrant splicing events, increase NOTCH1 activity and result in a more aggressive disease. In addition, mutations in an enhancer located on chromosome 9p13 result in reduced expression of the B-cell-specific transcription factor PAX5. The accumulative number of driver alterations (0 to ≥4) discriminated between patients with differences in clinical behaviour. This study provides an integrated portrait of the CLL genomic landscape, identifies new recurrent driver mutations of the disease, and suggests clinical interventions that may improve the management of this neoplasia.

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Year:  2015        PMID: 26200345     DOI: 10.1038/nature14666

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  353 in total

1.  Chronic lymphocytic leukemia: looking into the dark side of the genome.

Authors:  R Valdés-Mas; J Gutiérrez-Abril; X S Puente; C López-Otín
Journal:  Cell Death Differ       Date:  2015-11-27       Impact factor: 15.828

2.  LC-FACSeq is a method for detecting rare clones in leukemia.

Authors:  Eileen Y Hu; James S Blachly; Caner Saygin; Hatice G Ozer; Stephanie E Workman; Arletta Lozanski; Tzyy-Jye Doong; Chi-Ling Chiang; Seema Bhat; Kerry A Rogers; Jennifer A Woyach; Kevin R Coombes; Daniel Jones; Natarajan Muthusamy; Gerard Lozanski; John C Byrd
Journal:  JCI Insight       Date:  2020-06-18

Review 3.  The Untranslated Regions of mRNAs in Cancer.

Authors:  Samantha L Schuster; Andrew C Hsieh
Journal:  Trends Cancer       Date:  2019-03-22

4.  Cytogenetic complexity in chronic lymphocytic leukemia: definitions, associations, and clinical impact.

Authors:  Panagiotis Baliakas; Sabine Jeromin; Michalis Iskas; Anna Puiggros; Karla Plevova; Florence Nguyen-Khac; Zadie Davis; Gian Matteo Rigolin; Andrea Visentin; Aliki Xochelli; Julio Delgado; Fanny Baran-Marszak; Evangelia Stalika; Pau Abrisqueta; Kristina Durechova; George Papaioannou; Virginie Eclache; Maria Dimou; Theodoros Iliakis; Rosa Collado; Michael Doubek; M Jose Calasanz; Neus Ruiz-Xiville; Carolina Moreno; Marie Jarosova; Alexander C Leeksma; Panayiotis Panayiotidis; Helena Podgornik; Florence Cymbalista; Achilles Anagnostopoulos; Livio Trentin; Niki Stavroyianni; Fred Davi; Paolo Ghia; Arnon P Kater; Antonio Cuneo; Sarka Pospisilova; Blanca Espinet; Anastasia Athanasiadou; David Oscier; Claudia Haferlach; Kostas Stamatopoulos
Journal:  Blood       Date:  2019-01-02       Impact factor: 22.113

5.  Identification of recurrent noncoding mutations in B-cell lymphoma using capture Hi-C.

Authors:  Alex J Cornish; Phuc H Hoang; Sara E Dobbins; Philip J Law; Daniel Chubb; Giulia Orlando; Richard S Houlston
Journal:  Blood Adv       Date:  2019-01-08

6.  IW-Scoring: an Integrative Weighted Scoring framework for annotating and prioritizing genetic variations in the noncoding genome.

Authors:  Jun Wang; Abu Z Dayem Ullah; Claude Chelala
Journal:  Nucleic Acids Res       Date:  2018-05-04       Impact factor: 16.971

7.  Voxtalisib (XL765) in patients with relapsed or refractory non-Hodgkin lymphoma or chronic lymphocytic leukaemia: an open-label, phase 2 trial.

Authors:  Jennifer R Brown; Mehdi Hamadani; John Hayslip; Ann Janssens; Nina Wagner-Johnston; Oliver Ottmann; Jon Arnason; Hervé Tilly; Michael Millenson; Fritz Offner; Nashat Y Gabrail; Siddhartha Ganguly; Sikander Ailawadhi; Siddha Kasar; Arnon P Kater; Jeanette K Doorduijn; Lei Gao; Joanne J Lager; Bin Wu; Coumaran Egile; Marie José Kersten
Journal:  Lancet Haematol       Date:  2018-03-14       Impact factor: 18.959

8.  IRF4 modulates the response to BCR activation in chronic lymphocytic leukemia regulating IKAROS and SYK.

Authors:  Rossana Maffei; Stefania Fiorcari; Stefania Benatti; Claudio Giacinto Atene; Silvia Martinelli; Patrizia Zucchini; Leonardo Potenza; Mario Luppi; Roberto Marasca
Journal:  Leukemia       Date:  2021-02-23       Impact factor: 11.528

Review 9.  Clonal expansion in non-cancer tissues.

Authors:  Nobuyuki Kakiuchi; Seishi Ogawa
Journal:  Nat Rev Cancer       Date:  2021-02-24       Impact factor: 60.716

10.  Aberrant splicing of the tumor suppressor CYLD promotes the development of chronic lymphocytic leukemia via sustained NF-κB signaling.

Authors:  M Hahn; J-P Bürckert; C A Luttenberger; S Klebow; M Hess; M Al-Maarri; M Vogt; S Reißig; M Hallek; A Wienecke-Baldacchino; T Buch; C P Muller; C P Pallasch; F T Wunderlich; A Waisman; N Hövelmeyer
Journal:  Leukemia       Date:  2017-06-01       Impact factor: 11.528

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