| Literature DB >> 26199943 |
Yue Zhao1, Yue Feng1, Yun-Mei Zhang2, Xiao-Xue Ding2, Yu-Zhu Song1, A-Mei Zhang1, Li Liu1, Hong Zhang2, Jia-Huan Ding1, Xue-Shan Xia1.
Abstract
As a common cardiac disease mainly caused by gene mutations in sarcomeric cytoskeletal, calcium-handling, nuclear envelope, desmosomal, and transcription factor genes, inherited cardiomyopathy is becoming one of the major etiological factors of sudden cardiac death (SCD) and heart failure (HF). This disease is characterized by remarkable genetic heterogeneity, which makes it difficult to screen for pathogenic mutations using Sanger sequencing. In the present study, three probands, one with familial hypertrophic cardiomyopathy (FHCM) and two with familial dilated cardiomyopathy (FDCM), were recruited together with their respective family members. Using next-generation sequencing technology (NGS), 24 genes frequently known to be related to inherited cardiomyopathy were screened. Two hot spots (TNNI3-p.Arg145Gly, and LMNA-p.Arg190Trp) and double (LMNA-p.Arg190Trp plus MYH7-p.Arg1045His) heterozygous mutations were found to be highly correlated with familial cardiomyopathy. FDCM patients with doubly heterozygous mutations show a notably severe phenotype as we could confirm in our study; this indicates that the double mutations had a dose effect. In addition, it is proposed that genetic testing using NGS technology can be used as a cost-effective screening tool and help guide the treatment of patients with familial cardiomyopathy particularly regarding the risk of family members who are clinically asymptomatic.Entities:
Mesh:
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Year: 2015 PMID: 26199943 PMCID: PMC4495182 DOI: 10.1155/2015/561819
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
PCR primers for amplification of the mutation sites.
| Gene symbol | Nucleotide change | Exon | Primer (5′-3′) | Tm (°C) | Fragment size (bp) |
|---|---|---|---|---|---|
|
| c.433C>G | 7 | Sense: GCCTAAGCCGGGAAGAGACTGGTA | 55 | 437 |
| Antisense: GAGGACCCCTTACTAGCTGCTTCT | |||||
|
| |||||
|
| c.568C>T | 3 | Sense: GAGTAGCTGGGACTACAGGCGTGT | 57 | 1338 |
| Antisense: ATCTGACTCCACATCCTGCGACC | |||||
|
| |||||
|
| c.3134G>A | 25 | Sense: GGCAATCTCACAGTCCCCTAATAA | 55 | 508 |
| Antisense: TTTTTGCCAGGGAGGACCATCTAA | |||||
Figure 2The pedigrees of the families with hypertrophic and dilated cardiomyopathy. Male family members are indicated by squares; female family members are indicated by circles, deceased individuals are indicated by symbols with a strikethrough, the unaffected individuals are represented by open symbols, and the solid symbols represent affected individuals. In addition, the probands are marked with a black arrow. The presence of a mutation was indicated by a “+” sign and the absence of mutations was indicated by a “–” sign. Family A: II: 3 is the proband, I: 1 and II: 2 died of sudden cardiac death, and III: 1 is clinically unaffected; the other clinical data were unavailable; Family B: II: 1 and II: 3 are the probands, II: 2 died of sudden cardiac death, and III: 1 mutation is present, but individual is clinically unaffected.
Figure 1The electrocardiogram of probands with familial hypertrophic cardiomyopathy and familial dilated cardiomyopathy. (a) shows the electrocardiogram of the proband with HCM from family A (II: 3); the Q-wave was abnormal in sidewalls and the T-wave is changed; (b) shows the electrocardiogram of the proband with DCM from family B (II: 3); it reveals a significant ST-segment depression.
Potential of the nonsynonymous variations in patients with FHCM and FDCM.
| Proband | Gene name | Transcript name | Coverage | Zygosity | Nucleic acid change | Amino acid change | rs ID |
|---|---|---|---|---|---|---|---|
| Family A II: 3 |
| NM_002290 | 184 | Het | c.1471T>C | p.Tyr491His | rs1050348 |
|
| NM_000363 | 111 | Het | c.433C>G | p.Arg145Gly | rs104894724 | |
|
| NM_032578 | 169 | Het | c.2072G>C | p.Ser691Ile | rs10997975 | |
|
| NM_001134363 | 123 | Hom | c.2303G>C | p.Trp768Ser | rs1417635 | |
|
| NM_014000 | 172 | Het | c.2801C>T | p.Ala934Val | rs16931179 | |
|
| NM_198056 | 150 | Het | c.1673A>G | p.His558Arg | rs1805124 | |
|
| NM_002290 | 235 | Hom | c.3328G>A | p.Gly1110Ser | rs2032567 | |
|
| NM_007078 | 192 | Het | c.163G>A | p.Val55Ile | rs3740343 | |
|
| NM_032578 | 119 | Het | c.2409C>G | p.Ser803Arg | rs3814182 | |
|
| NM_001103 | 186 | Het | c.1423G>A | p.Asp475Asn | rs80257412 | |
|
| NM_001134363 | 153 | Het | c.3667G>C | p.Glu1223Gln | rs942077 | |
|
| NM_000258 | 201 | Het | c.92G>A | p.Arg31His | rs199639940 | |
|
| |||||||
| Family B II: 1 |
| NM_002290 | 191 | Het | c.1471T>C | p.Tyr491His | rs1050348 |
|
| NM_001134363 | 116 | Hom | c.2303G>C | p.Trp768Ser | rs1417635 | |
|
| NM_000257 | 176 | Het | c.3134G>A | p.Arg1045His | NA | |
|
| NM_014000 | 143 | Het | c.2801C>T | p.Ala934Val | rs16931179 | |
|
| NM_198056 | 133 | Het | c.1673A>G | p.His558Arg | rs1805124 | |
|
| NM_002290 | 225 | Hom | c.3328G>A | p.Gly1110Ser | rs2032567 | |
|
| NM_002471 | 107 | Het | c.3388G>A | p.Ala1130Thr | rs28730771 | |
|
| NM_002471 | 158 | Het | c.3302T>C | p.Val1101Ala | rs365990 | |
|
| NM_001001432 | 154 | Het | c.740A>G | p.Lys247Arg | rs3730238 | |
|
| NM_170708 | 130 | Het | c.568C>T | p.Arg190Trp | rs59026483 | |
|
| NM_001134363 | 147 | Het | c.3667G>C | p.Glu1223Gln | rs942077 | |
|
| |||||||
| Family B II: 3 |
| NM_002290 | 225 | Het | c.1471T>C | p.Tyr491His | rs1050348 |
|
| NM_032578 | 177 | Het | c.1471T>C | p.Tyr491His | rs10823148 | |
|
| NM_032578 | 179 | Het | c.2072G>A | p.Ser691Ile | rs10997975 | |
|
| NM_001134363 | 125 | Hom | c.2303G>C | p.Trp768Ser | rs1417635 | |
|
| NM_198056 | 140 | Het | c.1673A>G | p.His558Arg | rs1805124 | |
|
| NM_002290 | 286 | Hom | c.3328G>A | p.Gly1110Ser | rs2032567 | |
|
| NM_002471 | 121 | Het | c.3388G>A | p.Ala1130Thr | rs28730771 | |
|
| NM_002471 | 143 | Het | c.3302T>C | p.Val1101Ala | rs365990 | |
|
| NM_032578 | 198 | Het | c.2409C>G | p.Ser803Arg | rs3814182 | |
|
| NM_170708 | 114 | Het | c.568C>T | p.Arg190Trp | rs59026483 | |
|
| NM_032578 | 199 | Het | c.3403C>A | p.Pro1135Thr | rs7079481 | |
|
| NM_032578 | 186 | Het | c.2120G>A | p.Ser707Asn | rs7916821 | |
|
| NM_001134363 | 173 | Hom | c.3667G>C | p.Glu1223Gln | rs942077 | |
|
| NM_000257 | 169 | Het | c.3134G>A | p.Arg1045His | NA | |
|
| NM_001134363 | 166 | Het | c.3170G>A | p.Arg1057Gln | rs188054898 | |
Het: heterozygotes; Hom: homozygous; NA: not applicable.
Figure 3Results of the Sanger sequencing analysis. (a) shows the results for the TNNI3-p.Arg145Gly mutation in Family A; the results were positive in II: 3 and negative in III: 1; (b) shows the results for the LMNA-p.Arg190Trp mutation in Family B; the results were positive in II: 1, II: 3, and III: 1 and negative in I: 1; (c) shows the results for the MYH7-p.Arg1045His mutation in Family B; family members II: 1 and II: 3 tested positive, and III: 1 and I: 1 tested negative.
The documented TNNI3 mutations in HCM.
| Exon | Amino acid change | Local structure | Reported times | Population report group |
|---|---|---|---|---|
| 3 | p.Arg21Cys | TNNC binding domain | 1 | American [ |
| 3 | p.Arg13Cys | TNNC binding domain | 1 | Chinese [ |
| 4 | p.Lys36Gln | TNNC binding domain | 1 | English [ |
| 5 | p.Pro82Ser | TNNT2 binding domain | 1 | American [ |
| 7 | p.Arg141Gln | First actin binding domain | 2 | American [ |
| 7 | p.Arg145Gly | First actin binding domain | 8 | American [ |
| 7 | p.Arg145Gln | First actin binding domain | 1 | Japanese [ |
| 7 | p.Asn185Lys | TNNC binding domain | 1 | English [ |
| 7 | p.Ala157Val | TNNC binding domain | 3 | French [ |
| 7 | p.Arg162Pro | TNNC binding domain | 1 | French [ |
| 7 | p.Arg162Trp | TNNC binding domain | 1 | Japanese [ |
| 7 | p.Arg162Gln | TNNC binding domain | 2 | American [ |
| 7 | p.Ser166Phe | TNNC binding domain | 5 | American [ |
| 7 | p.Arg170Gln | TNNC binding domain | 1 | English [ |
| 7 | p.Ser166Phe | TNNC binding domain | 1 | German [ |
| 7 | p.Lys164Thr | TNNC binding domain | 1 | Dutch [ |
| 7 | p.Asp180Gly | TNNC binding domain | 1 | Dutch [ |
| 7 | p.Lys178del | TNNC binding domain | 1 | Dutch [ |
| 8 | p.Arg186Gln | TNNC binding domain | 1 | French [ |
| 8 | p.Asp196Asn | Second actin binding domain | 3 | French [ |
| 8 | p.Gly203Ser | Second actin binding domain | 1 | Japanese [ |
| 8 | p.Met201Thr | Second actin binding domain | 1 | Dutch [ |
| 8 | p.Arg204Cys | Second actin binding domain | 1 | American [ |
| 8 | p.Lys206Gln | Second actin binding domain | 1 | Japanese [ |
| 8 | p.Glu209Ala | Second actin binding domain | 5 | Dutch [ |
| 8 | p.Ile195Met | Second actin binding domain | 1 | American [ |
The documented LMNA mutations in DCM.
| Exon | Amino acid change | Local structure | Reported times | Population report group |
|---|---|---|---|---|
| 1 | p.Lys97Glu | Coil1b | 1 | Italian [ |
| 1 | p.Arg101Pro | Coil1b | 1 | American [ |
| 1 | p.Glu111 | Coil1b | 1 | Italian [ |
| 1 | p.Arg89Leu | Coil1b | 2 | American [ |
| 1 | p.Leu85Arg | Coil1b | 1 | American [ |
| 1 | p.Arg60Gly | Coil1b | 1 | American [ |
| 1 | p.Arg89Leu | Coil1b | 1 | American [ |
| 1 | p.Glu82Lys | Coil1b | 1 | Chinese [ |
| 2 | p.Arg166Pro | Coil1b | 1 | American [ |
| 2 | p.Glu161Lys | Coil1b | 1 | German [ |
| 3 | p.Arg190Trp | Coil1b | 7 | Spanish [ |
| 3 | p.Arg189Trp | Coil1b | 1 | Italy [ |
| 3 | p.Glu203Val | Coil1b | 1 | German [ |
| 3 | p.Arg190Gln | Coil1b | 2 | German [ |
| 3 | p.Glu203Lys | Coil1b | 1 | American [ |
| 3 | p.Ile210Ser | Coil1b | 1 | American [ |
| 3 | p.Asn195Lys | Coil1b | 1 | Dutch [ |
| 3 | p.Glu203Gly | Coil1b | 1 | American [ |
| 3 | p.Asn195Lys | Coil1b | 1 | American [ |
| 3 | p.Asp192Gly | Coil1b | 1 | English [ |
| 4 | p.Gly232Val | L12 | 1 | Chinese (Taipei) [ |
| 4 | p.Lys219Thr | L12 | 1 | German [ |
| 4 | p.Leu215Pro | L12 | 1 | American [ |
| 4 | p.Lys219Thr | L12 | 1 | Italy [ |
| 4 | p.His222Pro | L12 | 1 | French [ |
| 4 | p.Arg225 | L12 | 2 | American [ |
| 4 | p.Gln234 | L12 | 1 | American [ |
| 6 | p.Arg349Leu | Coil2b | 1 | Spanish [ |
| 6 | p.Glu317Lys | Coil2b | 1 | Italian [ |
| 6 | p.Ala318Thr | Coil2b | 1 | American [ |
| 7 | p.Arg388His | Tail | 1 | American [ |
| 7 | p.Arg377His | Tail | 1 | American [ |
| 8 | p.Arg471His | Tail | 1 | American [ |
| 8 | p.Tyr481 | Tail | 1 | English [ |
| 10 | p.Ser573Leu | Tail | 1 | American [ |
| 10 | p.Arg541Ser | Tail | 1 | English [ |
| 11 | p.Arg644Cys | Tail | 2 | German [ |
| 11 | p.Arg654 | Tail | 1 | American [ |
Stop codon.